/*******************************************************************************
 * @license
 * Copyright (c) 2011,2012 IBM Corporation and others.
 * All rights reserved. This program and the accompanying materials are made 
 * available under the terms of the Eclipse Public License v1.0 
 * (http://www.eclipse.org/legal/epl-v10.html), and the Eclipse Distribution 
 * License v1.0 (http://www.eclipse.org/org/documents/edl-v10.html). 
 *
 * Contributors:
 *     IBM Corporation - initial API and implementation
 *******************************************************************************/
/*eslint-env browser, amd*/
define(["orion/Deferred", "orion/commands", 	'orion/PageUtil', "orion/contentTypes", "orion/URITemplate", "orion/i18nUtil", "orion/PageLinks", "i18n!orion/edit/nls/messages", "orion/util", "orion/URL-shim"],
	function(Deferred, mCommands, PageUtil, mContentTypes, URITemplate, i18nUtil, PageLinks, messages, util){

	/**
	 * Utility methods
	 * @class This class contains static utility methods for creating and managing commands from extension points
	 * related to file management.
	 * @name orion.extensionCommands
	 */
	var extensionCommandUtils  = {};
	
	// TODO working around https://bugs.eclipse.org/bugs/show_bug.cgi?id=373450
	var orionHome = PageLinks.getOrionHome();
	
	extensionCommandUtils._cloneItemWithoutChildren = function clone(item){
	    if (item === null || typeof(item) !== 'object') { //$NON-NLS-0$
	        return item;
	      }
	
	    var temp = item.constructor(); // changed
	
	    for(var key in item){
			if(key!=="children" && key!=="Children" && key!=="parent" && key!=="Project") { //$NON-NLS-1$ //$NON-NLS-0$
				temp[key] = clone(item[key]);
			}
	    }
	    return temp;
	};
	
	/*
	 * Helper function which returns an object containing all of the specified 
	 * serviceReference's properties.
	 * @name _getServiceProperties
	 * @param {orion.serviceregistry.ServiceReference} serviceReference
	 * @returns {Object} All the properties of the given <code>serviceReference</code>.
	 */
	function _getServiceProperties(serviceReference){
		var info = {};
		var propertyNames = serviceReference.getPropertyKeys();
		propertyNames.forEach(function(propertyName) {
			info[propertyName] = serviceReference.getProperty(propertyName);
		});
		return info;
	}
	
	/**
	 * Reads <code>"orion.navigate.openWith"</code> service contributions and returns corresponding <code>orion.navigate.command<code> extensions.
	 * @name orion.extensionCommands._getOpenWithNavCommandExtensions
	 * @function
	 * @returns {Object[]} The nav command extensions.
	 */
	extensionCommandUtils._getOpenWithNavCommandExtensions = function(serviceRegistry, contentTypes) {
		function getEditors() {
			var serviceReferences = serviceRegistry.getServiceReferences("orion.edit.editor"); //$NON-NLS-0$
			var editors = [];
			for (var i=0; i < serviceReferences.length; i++) {
				var serviceRef = serviceReferences[i], id = serviceRef.getProperty("id"); //$NON-NLS-0$
				editors.push({
					id: id,
					"default": serviceRef.getProperty("default") || false, //$NON-NLS-1$ //$NON-NLS-0$
					name: serviceRef.getProperty("name"), //$NON-NLS-0$
					nameKey: serviceRef.getProperty("nameKey"), //$NON-NLS-0$
					nls: serviceRef.getProperty("nls"), //$NON-NLS-0$
					uriTemplate: serviceRef.getProperty("orionTemplate") || serviceRef.getProperty("uriTemplate"), //$NON-NLS-1$ //$NON-NLS-0$
					validationProperties: serviceRef.getProperty("validationProperties") || [] //$NON-NLS-0$
				});
			}
			return editors;
		}

		function getEditorOpenWith(serviceRegistry, editor) {
			var openWithReferences = serviceRegistry.getServiceReferences("orion.navigate.openWith"); //$NON-NLS-0$
			var types = [];
			var excludedTypes = [];
			for (var i=0; i < openWithReferences.length; i++) {
				var ref = openWithReferences[i];
				if (ref.getProperty("editor") === editor.id) { //$NON-NLS-0$
					var ct = ref.getProperty("contentType"); //$NON-NLS-0$
					if (ct instanceof Array) {
						types = types.concat(ct);
					} else { //$NON-NLS-0$
						types.push(ct || "*/*");
					}
					
					var excludes = ref.getProperty("excludedContentTypes"); //$NON-NLS-0$
					if (excludes instanceof Array) {
						excludedTypes = excludedTypes.concat(excludes);
					} else if ((excludes !== null) && (typeof excludes !== "undefined")) { //$NON-NLS-0$
						excludedTypes.push(excludes);
					}
				}
			}
			if (0 === types.length) {
				types = null;
			}
			if (0 === excludedTypes.length) {
				excludedTypes = null;
			}
			return {contentTypes: types, excludedContentTypes: excludedTypes};
		}
		
		var editors = getEditors();
		var fileCommands = [];
		var genericEditorOpen;
		var orionEditorId = "orion.editor";

		for (var i=0; i < editors.length; i++) {
			var editor = editors[i];
			var editorContentTypeInfo = getEditorOpenWith(serviceRegistry, editor);
			var editorContentTypes = editorContentTypeInfo.contentTypes;
			var excludedContentTypes = editorContentTypeInfo.excludedContentTypes;
			var properties = {
				name: editor.name || editor.id,
				nameKey: editor.nameKey,
				id: "eclipse.openWithCommand." + editor.id, //$NON-NLS-0$
				contentType: editorContentTypes,
				excludedContentTypes: excludedContentTypes,
				uriTemplate: editor.uriTemplate,
				nls: editor.nls,
				forceSingleItem: true,
				isEditor: (editor["default"] ? "default": "editor"), // Distinguishes from a normal fileCommand //$NON-NLS-2$ //$NON-NLS-1$ //$NON-NLS-0$
				validationProperties: editor.validationProperties
			};
			var command = {properties: properties, service: {}};
			if (editor.id === orionEditorId) {
				genericEditorOpen = command;
			} else {
				fileCommands.push(command);
			}
		}
		if (genericEditorOpen) {
			fileCommands.push(genericEditorOpen);
		}
		return fileCommands;
	};
	
	/**
	 * Create a validator for a given set of service properties.  The validator should be able to 
	 * validate a given item using the "contentType" and "validationProperties" service properties.
	 * @name orion.extensionCommands._makeValidator
	 * @function
	 */
	extensionCommandUtils._makeValidator = function(info, serviceRegistry, contentTypes, validationItemConverter) {
		function checkItem(item, key, match, validationProperty, validator) {
			var valid = false;
			var value;
			// Match missing property
			if (key.charAt(0) === "!") { //$NON-NLS-0$
				return (typeof item[key.substring(1)] === "undefined"); //$NON-NLS-0$
			}
			// item has the specified property
			if (typeof(item[key]) !== "undefined") { //$NON-NLS-0$
				if (typeof(match) === "undefined") {  //$NON-NLS-0$ // value doesn't matter, just the presence of the property is enough				if (!match) {  // value doesn't matter, just the presence of the property is enough
					value = item[key];
					valid = true;
				} else if (typeof(match) === 'string') {  // the value is a regular expression that should match some string //$NON-NLS-0$
					if (!typeof(item[key] === 'string')) { //$NON-NLS-0$
						// can't pattern match on a non-string
						return false;
					}
					if (validationProperty.variableName) {
						var patternMatch = new RegExp(match).exec(item[key]);
						if (patternMatch) {
							var firstMatch = patternMatch[0];
							if (validationProperty.variableMatchPosition === "before") { //$NON-NLS-0$
								value = item[key].substring(0, patternMatch.index);
							} else if (validationProperty.variableMatchPosition === "after") { //$NON-NLS-0$
								value = item[key].substring(patternMatch.index + firstMatch.length);
							} else if (validationProperty.variableMatchPosition === "only") { //$NON-NLS-0$
								value = firstMatch;
							} else {  // "all"
								value = item[key];
							}
							valid = true;
						}
					} else {
						return new RegExp(match).test(item[key]);
					}
				} else {
					if (item[key] === match) {
						value = item[key];
						valid = true;
					}
				}
				// now store any variable values and look for replacements
				var variableName = validationProperty.variableName, replacements = validationProperty.replacements;
				if (valid && variableName) {
					// store the variable values in the validator, keyed by variable name.  Also remember which item this value applies to.
					validator[variableName] = value;
					validator.itemCached = item;
					if (replacements) {
						if (typeof value !== "string") {
							window.console.log("Cannot replace " + variableName + ", value is not a string: " + value);
							return valid;
						}
						for (var i=0; i<replacements.length; i++) {
							var invalid = false;
							if (replacements[i].pattern) {
								var from = replacements[i].pattern;
								var to = replacements[i].replacement || "";
								validator[variableName] = validator[variableName].replace(new RegExp(from), to).replace(new RegExp(from), to);
							} else {
								invalid = true;
							}
							if (invalid) {
								window.console.log("Invalid replacements specified in validation property.  " + replacements[i]); //$NON-NLS-0$
							}
						}
					}
				}
				return valid;
			}
			return false;
		}

		/**
		 * @param {Object|Array} item
		 * @param {String} propertyName
		 * @param {Object} validationProperty
		 * @param {Validator} validator
		 */
		function matchSinglePattern(item, propertyName, validationProperty, validator){
			var value = validationProperty.match;
			var key, keyLastSegments, pos1, pos2;
			// Initial processing to handle array indices
			if ((pos1 = propertyName.indexOf("[")) >= 0) { //$NON-NLS-0$
				if((pos2 = propertyName.indexOf("]")) < 0){ //$NON-NLS-0$
					return false;
				}
				// The [] is used to drill into a numeric property of an array
				var fieldName = propertyName.substring(0, pos1), array, arrayIndex;
				if(!(array = item[fieldName]) || !Array.isArray(array)){
					return false;
				}
				key = propertyName.substring(pos1 + 1, pos2);
				arrayIndex = parseInt(key, 10);
				if (isNaN(arrayIndex))
					return false;

				// Index may be < 0 in which case it counts backwards from object.length
				if (arrayIndex < 0)
					arrayIndex += array.length;

				// Just rewrite the [] expression into a nested property access and fall down to the ":" case
				keyLastSegments = propertyName.substring(pos2 + 1);
				propertyName = fieldName + ":" + String(arrayIndex) + keyLastSegments;
			}

			if (propertyName.indexOf("|") >= 0) { //$NON-NLS-0$
				// the pipe means that any one of the piped properties can match
				key = propertyName.substring(0, propertyName.indexOf("|")); //$NON-NLS-0$
				keyLastSegments = propertyName.substring(propertyName.indexOf("|")+1); //$NON-NLS-0$
				// if key matches, we can stop.  No match is not a failure, look in the next segments.
				if (matchSinglePattern(item, key, validationProperty, validator)) {
					return true;
				} else {
					return matchSinglePattern(item, keyLastSegments, validationProperty, validator);
				}
			} else if (propertyName.indexOf(":") >= 0) { //$NON-NLS-0$
				// the colon is used to drill into a property
				key = propertyName.substring(0, propertyName.indexOf(":")); //$NON-NLS-0$
				keyLastSegments = propertyName.substring(propertyName.indexOf(":")+1); //$NON-NLS-0$
				// must have key and then check the next value
				if (item[key]) {
					return matchSinglePattern(item[key], keyLastSegments, validationProperty, validator);
				} else {
					return false;
				}
			} else {
				// we are checking a single property
				return checkItem(item, propertyName, value, validationProperty, validator);
			}
		}
		
		function validateSingleItem(item, contentTypes, validator){
			// first validation properties
			if (validator.info.validationProperties) {
				for (var i=0; i<validator.info.validationProperties.length; i++) {
					var validationProperty = validator.info.validationProperties[i];
					if (typeof(validationProperty.source) !== "undefined") { //$NON-NLS-0$
						var matchFound = matchSinglePattern(item, validationProperty.source, validationProperty, validator);
						if (!matchFound){
							return false;
						} 
					} else {
						window.console.log("Invalid validationProperties in " + info.id + ".  No source property specified."); //$NON-NLS-1$ //$NON-NLS-0$
						return false;
					}
				}
			}
			
			// Check content type validation
			if (!validator.info.contentType && !validator.info.excludedContentTypes){
				// Validation doesn't care about content type
				return true;
			}
			
			// Directories don't match any content types except */*
			if (item.Directory) {
				// */* is a special case used by openWithCommand that applies to directories (Bug 445677)
				if (validator.info.contentType && validator.info.contentType.indexOf('*/*') >= 0){
					return true;
				}
				return false;
			}
			
			var showCommand = true;
			var contentType = contentTypes ? mContentTypes.getFilenameContentType(item.Name, contentTypes) : null;
			contentType = contentType || {
				id:"application/octet-stream"
			};
			if (validator.info.excludedContentTypes && contentTypes) {
				showCommand = validator.info.excludedContentTypes.every(function(excludedContentType){
					var filter = excludedContentType.replace(/([*?])/g, ".$1");	//$NON-NLS-0$ //convert user input * and ? to .* and .?
					if (-1 !== contentType.id.search(filter)) {
						// found a match, return false thereby hiding this command
						return false;
					}
					return true;
				});
			}
			
			if (showCommand && validator.info.contentType && contentTypes) {
				// the presence of validator.info.contentType means that we only 
				// want to show the command if the contentType matches
				showCommand = validator.info.contentType.some(function(includedContentType){
					var filter = includedContentType.replace(/([*?])/g, ".$1");	//$NON-NLS-0$ //convert user input * and ? to .* and .?
					if (-1 !== contentType.id.search(filter)) {
						// found a match, return true
						return true;
					}
					return false;
				});
			}			
			return showCommand;
		}
	
		var validator = {info: info};
		validator.validationFunction =  function(items){
			if (typeof validationItemConverter === "function") { //$NON-NLS-0$
				items = validationItemConverter.call(this, items);
			}
			if (items) {
				if (Array.isArray(items)){
					if ((this.info.forceSingleItem || this.info.uriTemplate) && items.length !== 1) {
						return false;
					}
					if (items.length < 1){
						return false;
					}
				} else {
					items = [items];
				}
				
				for (var i=0; i<items.length; i++){
					if(!validateSingleItem(items[i], contentTypes, this)){
						return false;
					}
				}
				return true;
			}
			return false;
		};
		validator.generatesURI = function() {
			return !!this.info.uriTemplate;
		};
		
		validator.getURI = function(item) {
			if (this.info.uriTemplate) {
				var variableExpansions = {};
				// we need the properties of the item
				for (var property in item){
					if(Object.prototype.hasOwnProperty.call(item, property)){
						variableExpansions[property] = item[property];
					}
				}
				// now we need the variable expansions collected during validation.  
				if (this.info.validationProperties) {
					for (var i=0; i<this.info.validationProperties.length; i++) {
						var validationProperty = this.info.validationProperties[i];
						if (validationProperty.source && validationProperty.variableName) {
							// we may have just validated this item.  If so, we don't need to recompute the variable value.
							var alreadyCached = this.itemCached === item && this[validationProperty.variableName];
							if (!alreadyCached) {
								matchSinglePattern(item, validationProperty.source, validationProperty, this);
							}
							if (!item[validationProperty.variableName]) {
								variableExpansions[validationProperty.variableName] = this[validationProperty.variableName];
							} else {
								window.console.log("Variable name " + validationProperty.variableName + " in the extension " + this.info.id + " conflicts with an existing property in the item metadata."); //$NON-NLS-2$ //$NON-NLS-1$ //$NON-NLS-0$
							}
						}
					}
				}
				// special properties.  Should already be in metadata.  See bug https://bugs.eclipse.org/bugs/show_bug.cgi?id=373450
				variableExpansions.OrionHome = orionHome;
				var uriTemplate = new URITemplate(this.info.uriTemplate);
				return uriTemplate.expand(variableExpansions);
			} 
			return null;
		};
		return validator;
	};
	
	/**
	 * Helper function which returns the id from an info object.
	 */
	function getIdFromInfo(info) {
		return info.id || info.name;
	}

	var DEFAULT_NAME = messages["UnnamedCommand"]; //$NON-NLS-0$
	var DEFAULT_TOOLTIP = ""; //$NON-NLS-0$
	// Turns an info object containing the service properties and the service (or reference) into Command options.
	extensionCommandUtils._createCommandOptions = function(/**Object*/ info, /**Service*/ serviceOrReference, serviceRegistry, contentTypesMap, /**boolean*/ createNavigateCommandCallback, /**optional function**/ validationItemConverter) {
		
		var deferred = new Deferred();
		
		function enhanceCommandOptions(commandOptions, deferred){
			var validator = extensionCommandUtils._makeValidator(info, serviceRegistry, contentTypesMap, validationItemConverter);
			commandOptions.visibleWhen = validator.validationFunction.bind(validator);
			
			if (createNavigateCommandCallback) {
				if (validator.generatesURI.bind(validator)()) {
					commandOptions.hrefCallback = function(data){
						var item = Array.isArray(data.items) ? data.items[0] : data.items;
						var href = validator.getURI.bind(validator)(item);
						// Preserve the query params of the current location to keep context
						var url = new URL(href);
						if (!url.search) {
							url.search = window.location.search;
						}
						href = url.href;
						if (data.command && data.command.isEditor) {
							data.domNode.addEventListener("click", function(evt) {
								if(item.Location) {
									var resourceParam = PageUtil.matchResourceParameters();
									if(resourceParam.resource !== item.Location) {
										data.domNode.target = "_blank";
										return;
									}
									var cmdHrefParam = PageUtil.matchResourceParameters(href);
									if(cmdHrefParam && cmdHrefParam.editor === resourceParam.editor) {
										data.domNode.target = "_blank";
										return;
									}
								}
								data.domNode.target = "";
							});
						}
						return href;
					};
					if(util.isElectron && info.uriTemplate){
						commandOptions.hrefTarget = "_blank";
					}
				} else {
					var inf = info;
					commandOptions.callback = function(data){
						var shallowItemsClone;
						if (inf.forceSingleItem) {
							var item = Array.isArray(data.items) ? data.items[0] : data.items;
							shallowItemsClone = extensionCommandUtils._cloneItemWithoutChildren(item);
						} else {
							if (Array.isArray(data.items)) {
								shallowItemsClone = [];
								for (var j = 0; j<data.items.length; j++) {
									shallowItemsClone.push(extensionCommandUtils._cloneItemWithoutChildren(data.items[j]));
								}
							} else {
								shallowItemsClone = extensionCommandUtils._cloneItemWithoutChildren(data.items);
							}
						}
						if(serviceRegistry){
							var progress = serviceRegistry.getService("orion.page.progress");
						}
						if(serviceOrReference.run) {
							if(progress){
								progress.progress(serviceOrReference.run(shallowItemsClone), "Running command: " + commandOptions.name);
							}else {
								serviceOrReference.run(shallowItemsClone);
							}
						} else if (serviceRegistry) {
							if(progress){
								progress.progress(serviceRegistry.getService(serviceOrReference).run(shallowItemsClone), "Running command: " + commandOptions.name);
							} else {
								serviceRegistry.getService(serviceOrReference).run(shallowItemsClone);
							}
						}
					};
				}  // otherwise the caller will make an appropriate callback for the extension
			}
			deferred.resolve(commandOptions);
		}
		
		var commandOptions = {
			name: info.name || info.nameKey || DEFAULT_NAME,
			image: info.image,
			id: getIdFromInfo(info),
			tooltip: info.tooltip || info.tooltipKey || DEFAULT_TOOLTIP,
			isEditor: info.isEditor,
			showGlobally: info.showGlobally
		};
		
		// Quickfixes for annotations are handled via commands, this option enable quickfixes to apply to all annotations
		if (info.fixAllEnabled){
			commandOptions.fixAllEnabled = true;
		}
		enhanceCommandOptions(commandOptions, deferred);
		return deferred;
	};

	/**
	 * Gets the "open with" command in the given <code>commandRegistry</code> for a given item. If {@link #createFileCommands}, has not been called,
	 * this returns <code>null</code>.
	 * @name orion.extensionCommands.getOpenWithCommand
	 * @function
	 * @param {orion.commandregistry.CommandRegistry} commandRegistry The command registry to consult.
	 * @param {Object} item The item to open.
	 * @param {orion.commands.Command[]} The optional list of commands to search for the appropriate command. If it is not provided, 
	 * 		orion.extensionCommands.getOpenWithCommands() is used.
	 */
	extensionCommandUtils.getOpenWithCommand = function(commandRegistry, item, commands) {
		var openWithCommand;
		var openWithCommands = commands || extensionCommandUtils.getOpenWithCommands(commandRegistry);
		for (var i=0; i < openWithCommands.length; i++) {
			if (openWithCommands[i].visibleWhen(item)) {
				var isDefault = openWithCommands[i].isEditor === "default"; //$NON-NLS-0$
				if (!openWithCommand || isDefault) {
					openWithCommand = openWithCommands[i];
					if (isDefault) {
						break;
					}
				}
			}
		}
		return openWithCommand;
	};

	/**
	 * Gets any "open with" commands in the given <code>commandRegistry</code>. If {@link #createFileCommands}, has not been called,
	 * this returns an empty array.
	 * @name orion.extensionCommands.getOpenWithCommands
	 * @function
	 * @param {orion.commandregistry.CommandRegistry} commandRegistry The command registry to consult.
	 * @returns {orion.commands.Command[]} All the "open with" commands added to the given <code>commandRegistry</code>.
	 */
	extensionCommandUtils.getOpenWithCommands = function(commandRegistry) {
		var openWithCommands = [];
		for (var commandId in commandRegistry._commandList) {
			var command = commandRegistry._commandList[commandId];
			if (command.isEditor) {
				openWithCommands.push(command);
			}
		}
		return openWithCommands;
	};
	
	var contentTypesCache;

	/**
	 * Collects file commands from extensions, turns them into {@link orion.commands.Command}s, and adds the commands with the given <code>commandRegistry</code>.
	 * @name orion.extensionCommands.createAndPlaceFileCommandsExtension
	 * @function
	 * @param {orion.serviceregistry.ServiceRegistry} serviceRegistry
	 * @param {orion.commandregistry.CommandRegistry} commandRegistry
	 * @param {String} toolbarId
	 * @param {Number} position
	 * @param {String} commandGroup
	 * @param {Boolean} isNavigator
	 * @param {Function} visibleWhen
	 * @returns {orion.Promise}
	 */
	extensionCommandUtils.createAndPlaceFileCommandsExtension = function(serviceRegistry, commandRegistry, toolbarId, position, commandGroup, isNavigator) {
		var navCommands = (isNavigator ? "all" : undefined); //$NON-NLS-0$
		var openWithCommands = !!isNavigator;
		return extensionCommandUtils.createFileCommands(serviceRegistry, null, navCommands, openWithCommands, commandRegistry).then(function(fileCommands) {
			if (commandGroup && (0 < fileCommands.length)) {
				commandRegistry.addCommandGroup(toolbarId, "eclipse.openWith", 1000, messages["OpenWith"], commandGroup, null, null, null, "dropdownSelection"); ///$NON-NLS-1$ //$NON-NLS-0$
				commandRegistry.addCommandGroup(toolbarId, "eclipse.fileCommandExtensions", 1000, messages["OpenRelated"], commandGroup); //$NON-NLS-0$
			}
			fileCommands.forEach(function(command) {
				var group = null;	
				if (commandGroup) {
					if (command.isEditor) {
						group = commandGroup + "/eclipse.openWith"; //$NON-NLS-0$
					} else {
						group = commandGroup + "/eclipse.fileCommandExtensions"; //$NON-NLS-0$
					}
				}
				
				commandRegistry.registerCommandContribution(toolbarId, command.id, position, group); //$NON-NLS-0$
			});
			return {};
		});
	};
		
	/**
	 * Reads file commands from extensions (<code>"orion.navigate.command"</code> and <code>"orion.navigate.openWith"</code>), and converts them into
	 * instances of {@link orion.commands.Command}.
	 * @name orion.extensionCommands.createFileCommands
	 * @function
	 * @param {orion.serviceregistry.ServiceRegistry} serviceRegistry
	 * @param {orion.core.ContentTypeRegistry} [contentTypeRegistry] If not provided, will be obtained from the serviceRegistry.
	 * @param {String} [includeNavCommands="global"] What kinds of <code>orion.navigate.command</code> contributions to include in the list of returned file commands.
	 * Allowed values are:
	 * <dl>
	 * <dt><code>"all"</code></dt> <dd>Include all nav commands.</dd>
	 * <dt><code>"global"</code></dt> <dd>Include only nav commands having the <code>forceSingleItem</code> and <code>showGlobally</code> flags.</dd>
	 * <dt><code>"none"</code></dt> <dd>Include no nav commands.</dd>
	 * </dl>
	 * @param {Boolean} [includeOpenWithCommands=true] Whether to include commands derived from <code>orion.navigate.openWith</code> in the list of returned file commands.
	 * @param {orion.commandregistry.CommandRegistry} commandRegistry
	 * @returns {orion.Promise} A promise resolving to an {@link orion.commands.Command[]} giving an array of file commands.
	 */
	extensionCommandUtils.createFileCommands = function(serviceRegistry, contentTypeRegistry, includeFileCommands, includeOpenWithCommands, commandRegistry) {
		includeFileCommands = (includeFileCommands === undefined) ? "global" : includeFileCommands;
		includeOpenWithCommands = (includeOpenWithCommands === undefined) ? true : includeOpenWithCommands;

		// Note that the shape of the "orion.navigate.command" extension is not in any shape or form that could be considered final.
		// We've included it to enable experimentation. Please provide feedback on IRC or bugzilla.
		//
		// The shape of the contributed commands is (for now):
		// info - information about the command (object).
		//		required attribute: name - the name of the command
		//		required attribute: id - the id of the command
		//		optional attribute: tooltip - the tooltip to use for the command
		//      optional attribute: image - a URL to an image for the command
		//      optional attribute: uriTemplate - a URI template that can be expanded to generate a URI appropriate for the item.
		//      optional attribute: forceSingleItem - if true, then the service is only invoked when a single item is selected
		//			and the item parameter to the run method is guaranteed to be a single item vs. an array.  When this is not true, 
		//			the item parameter to the run method may be an array of items.
		//      optional attribute: contentType - an array of content types for which this command is valid
		//      optional attribute: validationProperties - an array of validation properties used to read the resource
		//          metadata to determine whether the command is valid for the given resource.  Regular expression patterns are
		//          supported as values in addition to specific values.
		//          For example the validation property
		//				[{source: "Git"}, {source: "Directory", match:"true"}]
		//              specifies that the property "Git" must be present, and that the property "Directory" must be true.
		// run - the implementation of the command (function).
		//        arguments passed to run: (itemOrItems)
		//          itemOrItems (object or array) - an array of items to which the item applies, or a single item if the info.forceSingleItem is true
		//        the run function is assumed to perform all necessary action and the return is not used.
		var fileCommands = [];
		
		if (!extensionCommandUtils._cachedFileCommands) {
			extensionCommandUtils._createCachedFileCommands(serviceRegistry);
		}
		
		//we have already created the file commands, only select applicable ones based on function parameters	
		if (includeFileCommands === "all" || includeFileCommands === "global") { //$NON-NLS-1$ //$NON-NLS-0$
			extensionCommandUtils._cachedFileCommands.forEach(function(fileCommand) {
				var properties = fileCommand.properties;
				// see https://bugs.eclipse.org/bugs/show_bug.cgi?id=402447
				if ((includeFileCommands === "all") || (properties.forceSingleItem && properties.showGlobally)) { //$NON-NLS-0$
					fileCommands.push(fileCommand);
				}
			});
		}
				
		function getContentTypes() {
			var contentTypes = serviceRegistry.getService("orion.core.contentTypeRegistry") || contentTypeRegistry;
			return contentTypesCache || Deferred.when(contentTypes.getContentTypes(), function(ct) { //$NON-NLS-0$
				contentTypesCache = ct;
				return contentTypesCache;
			});
		}
				
		return Deferred.when(getContentTypes(), function() {
			// If we are processing commands for the navigator, also include the open with command.  If we are not in the navigator, we only want the
			// commands we processed before.
			// see https://bugs.eclipse.org/bugs/show_bug.cgi?id=402447
			if (includeOpenWithCommands) {
				if (!extensionCommandUtils._cachedOpenWithExtensions) {
					extensionCommandUtils._cachedOpenWithExtensions = extensionCommandUtils._getOpenWithNavCommandExtensions(serviceRegistry, contentTypesCache);
				}
				//add _cachedOpenWithExtensions to fileCommands
				fileCommands = fileCommands.concat(extensionCommandUtils._cachedOpenWithExtensions);
				commandRegistry._addedOpenWithCommands = includeOpenWithCommands;
			}
						
			var commandDeferreds = fileCommands.map(function(fileCommand) {
				var commandInfo = fileCommand.properties;
				var service = fileCommand.service;
				var cachedCommand = commandRegistry.findCommand(getIdFromInfo(commandInfo));
				if (cachedCommand) {
					return new Deferred().resolve(cachedCommand);
				} else {
					return extensionCommandUtils._createCommandOptions(commandInfo, service, serviceRegistry, contentTypesCache, true).then(function(commandOptions) {
						var command = new mCommands.Command(commandOptions);
						commandRegistry.addCommand(command);
						return command;
					});
				}
			});
			return Deferred.all(commandDeferreds, function(error) {
				return {_error: error};
			}).then(function(errorOrResultArray) {
				return errorOrResultArray;
			});
		});
	};

	extensionCommandUtils._createCachedFileCommands = function(serviceRegistry) {
		var commandsReferences = serviceRegistry.getServiceReferences("orion.navigate.command"); //$NON-NLS-0$
		extensionCommandUtils._cachedFileCommands = [];

		for (var i=0; i<commandsReferences.length; i++) {
			// Exclude any navigation commands themselves, since we are the navigator.
			var id = commandsReferences[i].getProperty("id"); //$NON-NLS-0$
			if (id !== "orion.navigateFromMetadata") { //$NON-NLS-0$
				var service = serviceRegistry.getService(commandsReferences[i]);
				var properties = _getServiceProperties(commandsReferences[i]);
				extensionCommandUtils._cachedFileCommands.push({properties: properties, service: service});
			}
		}
	};
	
	/**
	 * Reads the cached non-openWith file commands from extensions, and 
	 * returns an array containing their ids. If the cached commands haven't
	 * been created an exception will be thrown.
	 * 
	 * @name orion.extensionCommands.getFileCommandIds
	 * @function
	 * @returns {Array} An array containing the {String} ids of the cached non-openWith file commands
	 */
	extensionCommandUtils.getFileCommandIds = function() {
		var ids = [];
		if (!extensionCommandUtils._cachedFileCommands) {
			throw "extensionCommandUtils._cachedFileCommands is not initialized"; //$NON-NLS-0$
		} else if (extensionCommandUtils._cachedFileCommands.length) {
			ids = extensionCommandUtils._cachedFileCommands.map(function(command){
				return command.properties.id;
			});
		}
		return ids;
	};
	
	/**
	 * Reads <code>"orion.navigate.openWith"</code> extensions, and converts them into instances of {@link orion.commands.Command}.
	 * @name orion.extensionCommands.createOpenWithCommands
	 * @function
	 * @param {orion.serviceregistry.ServiceRegistry} serviceRegistry
	 * @param {orion.commandregistry.CommandRegistry} [commandRegistry]
	 * @param {orion.core.ContentTypeRegistry} [contentTypeRegistry] If not provided, will be obtained from the serviceRegistry.
	 * @returns {orion.Promise} A promise resolving to an {@link orion.commands.Command[]} giving an array of file commands.
	 */
	extensionCommandUtils.createOpenWithCommands = function(serviceRegistry, contentTypeService, commandRegistry) {
		if (commandRegistry && commandRegistry._addedOpenWithCommands) {
			// already processed by #createAndPlaceFileCommandsExtension
			return new Deferred().resolve(extensionCommandUtils.getOpenWithCommands(commandRegistry));
		}
		return extensionCommandUtils.createFileCommands(serviceRegistry, contentTypeService, "none", true, commandRegistry);
	};

	return extensionCommandUtils;
});
