Retrieve available kingdoms of life — getKingdoms • biomartr
Description: A short list of available kingdoms of life

# Retrieve available kingdoms of life

Source: `R/getKingdoms.R`
`getKingdoms.Rd`

A short list of available kingdoms of life

    getKingdoms(db = "refseq")

## Arguments

db

  a character string specifying the database from which the genome shall be retrieved: `db = "refseq"`, `db = "genbank"`, `db = "ensembl"`, `db = "ensemblgenomes"`. Default is `db = "refseq"`.

## See also

`meta.retrieval`, `getGenome`, `getProteome`, `getCDS`, `getGroups`

## Author

Hajk-Georg Drost

## Examples

    # retrieve kingdoms available from refseq
    getKingdoms(db = "refseq")
    #> [1] "archaea"              "bacteria"             "fungi"
    #> [4] "invertebrate"         "plant"                "protozoa"
    #> [7] "vertebrate_mammalian" "vertebrate_other"     "viral"

    # retrieve kingdoms available from genbank
    getKingdoms(db = "genbank")
    #> [1] "archaea"              "bacteria"             "fungi"
    #> [4] "invertebrate"         "plant"                "protozoa"
    #> [7] "vertebrate_mammalian" "vertebrate_other"