Helper function to retrieve the assembly_summary.txt file from NCBI — getSummaryFile • biomartr
Description: Retrieval function of the assembly_summary.txt file from NCBI.

# Helper function to retrieve the assembly_summary.txt file from NCBI

Source: `R/getSummaryFile.R`
`getSummaryFile.Rd`

Retrieval function of the assembly_summary.txt file from NCBI.

    getSummaryFile(db, kingdom, file = assemblies_info_path(db, kingdom))

## Arguments

db

  database name. E.g. `refseq` or `genbank`.

kingdom

  kingdom for which assembly_summary.txt file shall be retrieved. See also `getKingdoms`.

file

  path, local path to total summary file, default is in tmp folder.

## See also

`getKingdomAssemblySummary`, `getMetaGenomeSummary`

## Author

Hajk-Georg Drost

## Examples

    if (FALSE) {
    test <- getSummaryFile("refseq","plant")
    test
    }