List number of available genomes in each taxonomic group — listGroups • biomartr
Description: Users can retrieve the available number of sequenced genomes per group. Only available for db = "refseq" and db = "genbank".

# List number of available genomes in each taxonomic group

Source: `R/listGroups.R`
`listGroups.Rd`

Users can retrieve the available number of sequenced genomes per group. Only available for `db = "refseq"` and `db = "genbank"`.

    listGroups(db = "refseq", kingdom = "all", details = FALSE)

## Arguments

db

  a character string specifying the database for which genome availability shall be checked. Available options are:

  - `db = "refseq"`

  - `db = "genbank"`

kingdom

  a kingdom specification retrieved by `getKingdoms`.

details

  shall all species corresponding to the specified `kingdom` be returned? Default is `details = FALSE`.

## See also

`listGenomes`, `is.genome.available`, `listKingdoms`

## Author

Hajk-Georg Drost

## Examples

    if (FALSE) {
    # example for refseq
    listGroups(db = "refseq")
    # example for genbank
    listGroups(db = "genbank")
    ### in case groups should be specified by kingdom
    # first, retrieve available kingdom names
    listKingdoms()
    # now we choose kingdom "bacteria"
    listGroups(db = "refseq", kingdom = "bacteria")
    # or
    listGroups(db = "genbank", kingdom = "bacteria")
    }