set today="2012-05-22"


set predir=stanford-ner-${today}
set destination=/u/nlp/distrib/
set classifierhome=/u/nlp/data/ner/goodClassifiers/
set base=$destination
set dir=$base/$predir
set classjar=$dir/stanford-ner-${today}.jar
set srcjar=$dir/stanford-ner-src-${today}.jar
set srczip=$dir/stanford-ner-src-${today}.zip
set doczip=$dir/stanford-ner-javadoc-${today}.zip

rm -rf $dir
mkdir $dir

if ( ! $?JAVANLP_HOME ) then

set nerplace=$JAVANLP_HOME/projects/core/doc/ner
cd $base


perl $JAVANLP_HOME/bin/gen-dependencies.pl -depdump $dir/depdump -classdir $JAVANLP_HOME/projects/core/classes -srcdir $JAVANLP_HOME/projects/core/src -srcjar $srcjar -manifest $JAVANLP_HOME/projects/core/src/edu/stanford/nlp/ie/crf/ner-manifest.txt -extrasourcefiles edu/stanford/nlp/ie/crf/package.html,edu/stanford/nlp/ie/package.html,edu/stanford/nlp/ie/crf/ner-manifest.txt,edu/stanford/nlp/process/PTBLexer.flex -classjar $classjar edu.stanford.nlp.ie.crf.CRFBiasedClassifier edu.stanford.nlp.ie.crf.CRFClassifier edu.stanford.nlp.ie.crf.NERGUI edu.stanford.nlp.ie.ClassifierCombiner edu.stanford.nlp.ie.NERServer edu.stanford.nlp.ie.NERFeatureFactory edu.stanford.nlp.ie.demo.NERDemo edu.stanford.nlp.sequences.ColumnDocumentReaderAndWriter edu.stanford.nlp.sequences.PlainTextDocumentReaderAndWriter edu.stanford.nlp.sequences.CoNLLDocumentReaderAndWriter edu.stanford.nlp.io.EncodingPrintWriter edu.stanford.nlp.ling.CoreAnnotations edu.stanford.nlp.ling.CoreAnnotations\\\$\\\* edu.stanford.nlp.util.IntPair edu.stanford.nlp.trees.TreeCoreAnnotations edu.stanford.nlp.ie.pascal.DefaultTeXHyphenData edu.stanford.nlp.trees.Tree edu.stanford.nlp.linalg.Array edu.stanford.nlp.ling.WordLemmaTag edu.stanford.nlp.parser.KBestViterbiParser edu.stanford.nlp.parser.tools.PunctEquivalenceClasser edu.stanford.nlp.process.DocumentPreprocessor edu.stanford.nlp.process.SerializableFunction edu.stanford.nlp.util.LowercaseFunction

#####
EXTRACTING DEPENDENCIES
#####

Dependency dump file:
	/u/nlp/distrib//stanford-ner-2012-05-22/depdump
Class directory:
	/user/horatio/releases/v1.3.2/projects/core/classes

java -classpath /u/nlp/java/liball/DependencyFinder.jar:/u/nlp/java/liball/jakarta-oro.jar:/u/nlp/java/liball/log4j.jar:/u/nlp/java/liball/xalan.jar:/u/nlp/java/liball/xercesImpl.jar:/u/nlp/java/liball/xml-apis.jar com.jeantessier.dependencyfinder.cli.DependencyExtractor -maximize -out /u/nlp/distrib//stanford-ner-2012-05-22/depdump /user/horatio/releases/v1.3.2/projects/core/classes
log4j:WARN No appenders could be found for logger (com.jeantessier.classreader.TransientClassfileLoader).
log4j:WARN Please initialize the log4j system properly.

#####
GENERATING CLOSURE
#####
Dependency dump file:
	/u/nlp/distrib//stanford-ner-2012-05-22/depdump

Starting classes:
	edu.stanford.nlp.ie.crf.CRFBiasedClassifier
	edu.stanford.nlp.ie.crf.CRFClassifier
	edu.stanford.nlp.ie.crf.NERGUI
	edu.stanford.nlp.ie.ClassifierCombiner
	edu.stanford.nlp.ie.NERServer
	edu.stanford.nlp.ie.NERFeatureFactory
	edu.stanford.nlp.ie.demo.NERDemo
	edu.stanford.nlp.sequences.ColumnDocumentReaderAndWriter
	edu.stanford.nlp.sequences.PlainTextDocumentReaderAndWriter
	edu.stanford.nlp.sequences.CoNLLDocumentReaderAndWriter
	edu.stanford.nlp.io.EncodingPrintWriter
	edu.stanford.nlp.ling.CoreAnnotations
	edu.stanford.nlp.ling.CoreAnnotations\$\*
	edu.stanford.nlp.util.IntPair
	edu.stanford.nlp.trees.TreeCoreAnnotations
	edu.stanford.nlp.ie.pascal.DefaultTeXHyphenData
	edu.stanford.nlp.trees.Tree
	edu.stanford.nlp.linalg.Array
	edu.stanford.nlp.ling.WordLemmaTag
	edu.stanford.nlp.parser.KBestViterbiParser
	edu.stanford.nlp.parser.tools.PunctEquivalenceClasser
	edu.stanford.nlp.process.DocumentPreprocessor
	edu.stanford.nlp.process.SerializableFunction
	edu.stanford.nlp.util.LowercaseFunction

java -classpath /user/horatio/releases/v1.3.2/projects/core/classes edu.stanford.nlp.misc.DependencyAnalyzer /u/nlp/distrib//stanford-ner-2012-05-22/depdump edu.stanford.nlp.ie.crf.CRFBiasedClassifier edu.stanford.nlp.ie.crf.CRFClassifier edu.stanford.nlp.ie.crf.NERGUI edu.stanford.nlp.ie.ClassifierCombiner edu.stanford.nlp.ie.NERServer edu.stanford.nlp.ie.NERFeatureFactory edu.stanford.nlp.ie.demo.NERDemo edu.stanford.nlp.sequences.ColumnDocumentReaderAndWriter edu.stanford.nlp.sequences.PlainTextDocumentReaderAndWriter edu.stanford.nlp.sequences.CoNLLDocumentReaderAndWriter edu.stanford.nlp.io.EncodingPrintWriter edu.stanford.nlp.ling.CoreAnnotations edu.stanford.nlp.ling.CoreAnnotations\$\* edu.stanford.nlp.util.IntPair edu.stanford.nlp.trees.TreeCoreAnnotations edu.stanford.nlp.ie.pascal.DefaultTeXHyphenData edu.stanford.nlp.trees.Tree edu.stanford.nlp.linalg.Array edu.stanford.nlp.ling.WordLemmaTag edu.stanford.nlp.parser.KBestViterbiParser edu.stanford.nlp.parser.tools.PunctEquivalenceClasser edu.stanford.nlp.process.DocumentPreprocessor edu.stanford.nlp.process.SerializableFunction edu.stanford.nlp.util.LowercaseFunction
Warning: pattern edu.stanford.nlp.linalg.Array matched nothing

Class list:
	edu/stanford/nlp/classify/AbstractLinearClassifierFactory.class
	edu/stanford/nlp/classify/AdaptedGaussianPriorObjectiveFunction.class
	edu/stanford/nlp/classify/BiasedLogConditionalObjectiveFunction.class
	edu/stanford/nlp/classify/Classifier.class
	edu/stanford/nlp/classify/ClassifierCreator.class
	edu/stanford/nlp/classify/ClassifierFactory.class
	edu/stanford/nlp/classify/CrossValidator.class
	edu/stanford/nlp/classify/CrossValidator$CrossValidationIterator.class
	edu/stanford/nlp/classify/CrossValidator$SavedState.class
	edu/stanford/nlp/classify/Dataset.class
	edu/stanford/nlp/classify/GeneralDataset.class
	edu/stanford/nlp/classify/GeneralDataset$1.class
	edu/stanford/nlp/classify/GeneralizedExpectationObjectiveFunction.class
	edu/stanford/nlp/classify/LinearClassifier.class
	edu/stanford/nlp/classify/LinearClassifierFactory.class
	edu/stanford/nlp/classify/LinearClassifierFactory$1.class
	edu/stanford/nlp/classify/LinearClassifierFactory$2.class
	edu/stanford/nlp/classify/LinearClassifierFactory$LinearClassifierCreator.class
	edu/stanford/nlp/classify/LinearClassifierFactory$NegativeScorer.class
	edu/stanford/nlp/classify/LogConditionalObjectiveFunction.class
	edu/stanford/nlp/classify/LogPrior.class
	edu/stanford/nlp/classify/LogPrior$1.class
	edu/stanford/nlp/classify/LogPrior$LogPriorType.class
	edu/stanford/nlp/classify/NBLinearClassifierFactory.class
	edu/stanford/nlp/classify/NBLinearClassifierFactory$1.class
	edu/stanford/nlp/classify/PRCurve.class
	edu/stanford/nlp/classify/ProbabilisticClassifier.class
	edu/stanford/nlp/classify/ProbabilisticClassifierCreator.class
	edu/stanford/nlp/classify/RVFClassifier.class
	edu/stanford/nlp/classify/RVFDataset.class
	edu/stanford/nlp/classify/RVFDataset$1.class
	edu/stanford/nlp/classify/SVMLightClassifier.class
	edu/stanford/nlp/classify/SVMLightClassifierFactory.class
	edu/stanford/nlp/classify/SVMLightClassifierFactory$1.class
	edu/stanford/nlp/classify/SVMLightClassifierFactory$2.class
	edu/stanford/nlp/classify/SVMLightClassifierFactory$3.class
	edu/stanford/nlp/classify/SemiSupervisedLogConditionalObjectiveFunction.class
	edu/stanford/nlp/classify/WeightedDataset.class
	edu/stanford/nlp/fsm/DFSA.class
	edu/stanford/nlp/fsm/DFSAState.class
	edu/stanford/nlp/fsm/DFSATransition.class
	edu/stanford/nlp/ie/AbstractSequenceClassifier.class
	edu/stanford/nlp/ie/AbstractSequenceClassifier$1.class
	edu/stanford/nlp/ie/AcquisitionsPrior.class
	edu/stanford/nlp/ie/ClassifierCombiner.class
	edu/stanford/nlp/ie/EmpiricalNERPrior.class
	edu/stanford/nlp/ie/Entity.class
	edu/stanford/nlp/ie/EntityCachingAbstractSequencePrior.class
	edu/stanford/nlp/ie/NERFeatureFactory.class
	edu/stanford/nlp/ie/NERFeatureFactory$1.class
	edu/stanford/nlp/ie/NERFeatureFactory$Bin1Annotation.class
	edu/stanford/nlp/ie/NERFeatureFactory$Bin2Annotation.class
	edu/stanford/nlp/ie/NERFeatureFactory$Bin3Annotation.class
	edu/stanford/nlp/ie/NERFeatureFactory$Bin4Annotation.class
	edu/stanford/nlp/ie/NERFeatureFactory$Bin5Annotation.class
	edu/stanford/nlp/ie/NERFeatureFactory$Bin6Annotation.class
	edu/stanford/nlp/ie/NERFeatureFactory$GazetteInfo.class
	edu/stanford/nlp/ie/NERServer.class
	edu/stanford/nlp/ie/NERServer$1.class
	edu/stanford/nlp/ie/NERServer$NERClient.class
	edu/stanford/nlp/ie/NERServer$Session.class
	edu/stanford/nlp/ie/SeminarsPrior.class
	edu/stanford/nlp/ie/UniformPrior.class
	edu/stanford/nlp/ie/crf/CRFBiasedClassifier.class
	edu/stanford/nlp/ie/crf/CRFBiasedClassifier$CRFBiasedClassifierOptimizer.class
	edu/stanford/nlp/ie/crf/CRFClassifier.class
	edu/stanford/nlp/ie/crf/CRFClassifier$TestSequenceModel.class
	edu/stanford/nlp/ie/crf/CRFClassifierEvaluator.class
	edu/stanford/nlp/ie/crf/CRFCliqueTree.class
	edu/stanford/nlp/ie/crf/CRFDatum.class
	edu/stanford/nlp/ie/crf/CRFFeatureExporter.class
	edu/stanford/nlp/ie/crf/CRFLabel.class
	edu/stanford/nlp/ie/crf/CRFLogConditionalObjectiveFloatFunction.class
	edu/stanford/nlp/ie/crf/CRFLogConditionalObjectiveFunction.class
	edu/stanford/nlp/ie/crf/FactorTable.class
	edu/stanford/nlp/ie/crf/FloatFactorTable.class
	edu/stanford/nlp/ie/crf/NERGUI.class
	edu/stanford/nlp/ie/crf/NERGUI$1.class
	edu/stanford/nlp/ie/crf/NERGUI$ActionPerformer.class
	edu/stanford/nlp/ie/crf/NERGUI$ColorIcon.class
	edu/stanford/nlp/ie/crf/NERGUI$InputListener.class
	edu/stanford/nlp/ie/demo/NERDemo.class
	edu/stanford/nlp/ie/ner/CMMClassifier.class
	edu/stanford/nlp/ie/ner/CMMClassifier$Scorer.class
	edu/stanford/nlp/ie/pascal/AcronymModel.class
	edu/stanford/nlp/ie/pascal/AcronymModel$AfterAligned.class
	edu/stanford/nlp/ie/pascal/AcronymModel$AlignedPerWord.class
	edu/stanford/nlp/ie/pascal/AcronymModel$BegWord.class
	edu/stanford/nlp/ie/pascal/AcronymModel$EndWord.class
	edu/stanford/nlp/ie/pascal/AcronymModel$Feature.class
	edu/stanford/nlp/ie/pascal/AcronymModel$LettersAligned.class
	edu/stanford/nlp/ie/pascal/AcronymModel$SyllableBoundary.class
	edu/stanford/nlp/ie/pascal/AcronymModel$WordsSkipped.class
	edu/stanford/nlp/ie/pascal/Alignment.class
	edu/stanford/nlp/ie/pascal/AlignmentFactory.class
	edu/stanford/nlp/ie/pascal/CliqueTemplates.class
	edu/stanford/nlp/ie/pascal/DateTemplate.class
	edu/stanford/nlp/ie/pascal/DefaultTeXHyphenData.class
	edu/stanford/nlp/ie/pascal/InfoTemplate.class
	edu/stanford/nlp/ie/pascal/PascalTemplate.class
	edu/stanford/nlp/ie/pascal/Prior.class
	edu/stanford/nlp/ie/pascal/RelationalModel.class
	edu/stanford/nlp/ie/pascal/TeXHyphenator.class
	edu/stanford/nlp/ie/pascal/TeXHyphenator$1.class
	edu/stanford/nlp/ie/pascal/TeXHyphenator$Node.class
	edu/stanford/nlp/international/morph/MorphoFeatureSpecification.class
	edu/stanford/nlp/international/morph/MorphoFeatureSpecification$MorphoFeatureType.class
	edu/stanford/nlp/international/morph/MorphoFeatures.class
	edu/stanford/nlp/io/BZip2PipedOutputStream.class
	edu/stanford/nlp/io/EncodingFileReader.class
	edu/stanford/nlp/io/EncodingPrintWriter.class
	edu/stanford/nlp/io/EncodingPrintWriter$err.class
	edu/stanford/nlp/io/EncodingPrintWriter$out.class
	edu/stanford/nlp/io/ExtensionFileFilter.class
	edu/stanford/nlp/io/IOUtils.class
	edu/stanford/nlp/io/IOUtils$1.class
	edu/stanford/nlp/io/IOUtils$1$1.class
	edu/stanford/nlp/io/IOUtils$2.class
	edu/stanford/nlp/io/IOUtils$2$1.class
	edu/stanford/nlp/io/NumberRangesFileFilter.class
	edu/stanford/nlp/io/RegExFileFilter.class
	edu/stanford/nlp/io/RuntimeIOException.class
	edu/stanford/nlp/ling/AnnotationLookup.class
	edu/stanford/nlp/ling/AnnotationLookup$KeyLookup.class
	edu/stanford/nlp/ling/AnnotationLookup$KeyLookup$1.class
	edu/stanford/nlp/ling/BasicDatum.class
	edu/stanford/nlp/ling/CategoryWordTag.class
	edu/stanford/nlp/ling/CategoryWordTag$LabelFactoryHolder.class
	edu/stanford/nlp/ling/CategoryWordTagFactory.class
	edu/stanford/nlp/ling/CoreAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations.class
	edu/stanford/nlp/ling/CoreAnnotations$AbbrAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AbgeneAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AbstrAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AfterAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AnswerObjectAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$AntecedentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ArgDescendentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ArgumentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BagOfWordsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BeforeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BeginIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BestCliquesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$BestFullAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CalendarAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CategoryAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CategoryFunctionalTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CharAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CharacterOffsetBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CharacterOffsetEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseCharAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseIsSegmentedAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseOrigSegAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChineseSegAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ChunkAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLDepAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLDepParentIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLDepTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLPredicateAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoNLLSRLAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CoarseTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CommonWordsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ContextsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CopyAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CostMagnificationAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$CovertIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$D2_LBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$D2_LEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$D2_LMiddleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DayAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DependentsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DictAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DistSimAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DoAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DocDateAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DocIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$DomainAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EndIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EntityClassAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EntityRuleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$EntityTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FeaturesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FemaleGazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FirstChildAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ForcedSentenceEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$FreqAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GazetteerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GenericTokensAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GeniaAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GoldAnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GovernorAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$GrandparentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$HaveAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$HeadWordStringAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$HeightAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IDFAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$INAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$InterpretationAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IsDateRangeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$IsURLAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LMiddleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LabelAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LabelWeightAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LastGazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LastTaggedAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LeftChildrenNodeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LeftTermAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LemmaAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$LengthAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MaleGazAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MarkingAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MonthAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoCaseAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoGenAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoNumAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$MorphoPersAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NERIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NamedEntityTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NeighborsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NormalizedNamedEntityTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NotAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumTxtSentencesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericCompositeObjectAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericCompositeTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericCompositeValueAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericObjectAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericTypeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumericValueAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$NumerizedTokensAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$OriginalAnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$OriginalCharAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$OriginalTextAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParaPositionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParagraphAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParagraphsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ParentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PartOfSpeechAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PercentAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PhraseWordsAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PhraseWordsTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PolarityAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PositionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PossibleAnswersAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PredictedAnswerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PrevChildAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$PriorAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ProjectedCategoryAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ProtoAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$RoleAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SRLIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SRLInstancesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SRL_ID.class
	edu/stanford/nlp/ling/CoreAnnotations$SectionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticHeadTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticHeadWordAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SemanticWordAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentenceIDAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentenceIndexAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentencePositionAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SentencesAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$ShapeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SpaceBeforeAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SpanAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SpeakerAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$StackedNamedEntityTagAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$StateAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$StemAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$SubcategorizationAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TagLabelAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TextAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TokenBeginAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TokenEndAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TokensAnnotation.class
	edu/stanford/nlp/ling/CoreAnnotations$TopicAnnotation.class
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	edu/stanford/nlp/util/Maps.class
	edu/stanford/nlp/util/Maps$1.class
	edu/stanford/nlp/util/MemoryMonitor.class
	edu/stanford/nlp/util/MemoryMonitor$PeakMemoryMonitor.class
	edu/stanford/nlp/util/MetaClass.class
	edu/stanford/nlp/util/MetaClass$1.class
	edu/stanford/nlp/util/MetaClass$ClassCreationException.class
	edu/stanford/nlp/util/MetaClass$ClassFactory.class
	edu/stanford/nlp/util/MetaClass$ConstructorNotFoundException.class
	edu/stanford/nlp/util/MutableDouble.class
	edu/stanford/nlp/util/MutableInteger.class
	edu/stanford/nlp/util/PaddedList.class
	edu/stanford/nlp/util/Pair.class
	edu/stanford/nlp/util/Pair$1.class
	edu/stanford/nlp/util/Pair$MutableInternedPair.class
	edu/stanford/nlp/util/PriorityQueue.class
	edu/stanford/nlp/util/PropertiesUtils.class
	edu/stanford/nlp/util/ReflectionLoading.class
	edu/stanford/nlp/util/ReflectionLoading$ReflectionLoadingException.class
	edu/stanford/nlp/util/Scored.class
	edu/stanford/nlp/util/ScoredComparator.class
	edu/stanford/nlp/util/ScoredObject.class
	edu/stanford/nlp/util/Sets.class
	edu/stanford/nlp/util/StreamGobbler.class
	edu/stanford/nlp/util/StringUtils.class
	edu/stanford/nlp/util/StringUtils$1.class
	edu/stanford/nlp/util/SystemUtils.class
	edu/stanford/nlp/util/SystemUtils$ProcessException.class
	edu/stanford/nlp/util/SystemUtils$ProcessOutputStream.class
	edu/stanford/nlp/util/SystemUtils$WriterThread.class
	edu/stanford/nlp/util/Timing.class
	edu/stanford/nlp/util/Triple.class
	edu/stanford/nlp/util/TypesafeMap.class
	edu/stanford/nlp/util/TypesafeMap$Key.class
	edu/stanford/nlp/util/XMLUtils.class
	edu/stanford/nlp/util/XMLUtils$1.class
	edu/stanford/nlp/util/XMLUtils$SAXErrorHandler.class
	edu/stanford/nlp/util/XMLUtils$XMLTag.class
	edu/stanford/nlp/util/concurrent/SynchronizedInterner.class
	edu/stanford/nlp/util/concurrent/SynchronizedInterner$1.class
	edu/stanford/nlp/util/logging/Color.class
	edu/stanford/nlp/util/logging/LogRecordHandler.class
	edu/stanford/nlp/util/logging/OutputHandler.class
	edu/stanford/nlp/util/logging/OutputHandler$1.class
	edu/stanford/nlp/util/logging/OutputHandler$TrackInfo.class
	edu/stanford/nlp/util/logging/PrettyLoggable.class
	edu/stanford/nlp/util/logging/PrettyLogger.class
	edu/stanford/nlp/util/logging/PrettyLogger$1.class
	edu/stanford/nlp/util/logging/Redwood.class
	edu/stanford/nlp/util/logging/Redwood$1.class
	edu/stanford/nlp/util/logging/Redwood$2.class
	edu/stanford/nlp/util/logging/Redwood$3.class
	edu/stanford/nlp/util/logging/Redwood$4.class
	edu/stanford/nlp/util/logging/Redwood$5.class
	edu/stanford/nlp/util/logging/Redwood$6.class
	edu/stanford/nlp/util/logging/Redwood$7.class
	edu/stanford/nlp/util/logging/Redwood$ConsoleHandler.class
	edu/stanford/nlp/util/logging/Redwood$FileHandler.class
	edu/stanford/nlp/util/logging/Redwood$Flag.class
	edu/stanford/nlp/util/logging/Redwood$MessageType.class
	edu/stanford/nlp/util/logging/Redwood$Record.class
	edu/stanford/nlp/util/logging/Redwood$Record$1.class
	edu/stanford/nlp/util/logging/Redwood$RecordHandlerTree.class
	edu/stanford/nlp/util/logging/Redwood$RecordHandlerTree$1.class
	edu/stanford/nlp/util/logging/Redwood$RedwoodChannels.class
	edu/stanford/nlp/util/logging/Redwood$Util.class
	edu/stanford/nlp/util/logging/Redwood$Util$1.class
	edu/stanford/nlp/util/logging/Redwood$Util$Tantrum.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$1.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$10.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$11.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$12.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$12$1.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$13.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$14.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$15.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$2.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$3.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$4.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$5.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$6.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$7.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$8.class
	edu/stanford/nlp/util/logging/RedwoodConfiguration$9.class
	edu/stanford/nlp/util/logging/RedwoodPrintStream.class
	edu/stanford/nlp/util/logging/RedwoodPrintStream$1.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$1.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$ApproximateRepeatSemantics.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$ExactRepeatSemantics.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$PendingType.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$RepeatSemantics.class
	edu/stanford/nlp/util/logging/RepeatedRecordHandler$RepeatedRecordInfo.class
	edu/stanford/nlp/util/logging/Style.class
	edu/stanford/nlp/util/logging/VisibilityHandler.class
	edu/stanford/nlp/util/logging/VisibilityHandler$1.class
	edu/stanford/nlp/util/logging/VisibilityHandler$State.class


#####
GENERATING JAR FILE
#####

JAR file:
	/u/nlp/distrib//stanford-ner-2012-05-22/stanford-ner-2012-05-22.jar
Root directory:
	/user/horatio/releases/v1.3.2/projects/core/classes

jar cfm /juicy/u44/u/nlp/distrib/stanford-ner-2012-05-22/stanford-ner-2012-05-22.jar /user/horatio/releases/v1.3.2/projects/core/src/edu/stanford/nlp/ie/crf/ner-manifest.txt edu/stanford/nlp/classify/AbstractLinearClassifierFactory.class \
 edu/stanford/nlp/classify/AdaptedGaussianPriorObjectiveFunction.class \
 edu/stanford/nlp/classify/BiasedLogConditionalObjectiveFunction.class \
 edu/stanford/nlp/classify/Classifier.class \
 edu/stanford/nlp/classify/ClassifierCreator.class \
 edu/stanford/nlp/classify/ClassifierFactory.class \
 edu/stanford/nlp/classify/CrossValidator.class \
 edu/stanford/nlp/classify/CrossValidator\$CrossValidationIterator.class \
 edu/stanford/nlp/classify/CrossValidator\$SavedState.class \
 edu/stanford/nlp/classify/Dataset.class \
 edu/stanford/nlp/classify/GeneralDataset.class \
 edu/stanford/nlp/classify/GeneralDataset\$1.class \
 edu/stanford/nlp/classify/GeneralizedExpectationObjectiveFunction.class \
 edu/stanford/nlp/classify/LinearClassifier.class \
 edu/stanford/nlp/classify/LinearClassifierFactory.class \
 edu/stanford/nlp/classify/LinearClassifierFactory\$1.class \
 edu/stanford/nlp/classify/LinearClassifierFactory\$2.class \
 edu/stanford/nlp/classify/LinearClassifierFactory\$LinearClassifierCreator.class \
 edu/stanford/nlp/classify/LinearClassifierFactory\$NegativeScorer.class \
 edu/stanford/nlp/classify/LogConditionalObjectiveFunction.class \
 edu/stanford/nlp/classify/LogPrior.class \
 edu/stanford/nlp/classify/LogPrior\$1.class \
 edu/stanford/nlp/classify/LogPrior\$LogPriorType.class \
 edu/stanford/nlp/classify/NBLinearClassifierFactory.class \
 edu/stanford/nlp/classify/NBLinearClassifierFactory\$1.class \
 edu/stanford/nlp/classify/PRCurve.class \
 edu/stanford/nlp/classify/ProbabilisticClassifier.class \
 edu/stanford/nlp/classify/ProbabilisticClassifierCreator.class \
 edu/stanford/nlp/classify/RVFClassifier.class \
 edu/stanford/nlp/classify/RVFDataset.class \
 edu/stanford/nlp/classify/RVFDataset\$1.class \
 edu/stanford/nlp/classify/SVMLightClassifier.class \
 edu/stanford/nlp/classify/SVMLightClassifierFactory.class \
 edu/stanford/nlp/classify/SVMLightClassifierFactory\$1.class \
 edu/stanford/nlp/classify/SVMLightClassifierFactory\$2.class \
 edu/stanford/nlp/classify/SVMLightClassifierFactory\$3.class \
 edu/stanford/nlp/classify/SemiSupervisedLogConditionalObjectiveFunction.class \
 edu/stanford/nlp/classify/WeightedDataset.class \
 edu/stanford/nlp/fsm/DFSA.class \
 edu/stanford/nlp/fsm/DFSAState.class \
 edu/stanford/nlp/fsm/DFSATransition.class \
 edu/stanford/nlp/ie/AbstractSequenceClassifier.class \
 edu/stanford/nlp/ie/AbstractSequenceClassifier\$1.class \
 edu/stanford/nlp/ie/AcquisitionsPrior.class \
 edu/stanford/nlp/ie/ClassifierCombiner.class \
 edu/stanford/nlp/ie/EmpiricalNERPrior.class \
 edu/stanford/nlp/ie/Entity.class \
 edu/stanford/nlp/ie/EntityCachingAbstractSequencePrior.class \
 edu/stanford/nlp/ie/NERFeatureFactory.class \
 edu/stanford/nlp/ie/NERFeatureFactory\$1.class \
 edu/stanford/nlp/ie/NERFeatureFactory\$Bin1Annotation.class \
 edu/stanford/nlp/ie/NERFeatureFactory\$Bin2Annotation.class \
 edu/stanford/nlp/ie/NERFeatureFactory\$Bin3Annotation.class \
 edu/stanford/nlp/ie/NERFeatureFactory\$Bin4Annotation.class \
 edu/stanford/nlp/ie/NERFeatureFactory\$Bin5Annotation.class \
 edu/stanford/nlp/ie/NERFeatureFactory\$Bin6Annotation.class \
 edu/stanford/nlp/ie/NERFeatureFactory\$GazetteInfo.class \
 edu/stanford/nlp/ie/NERServer.class \
 edu/stanford/nlp/ie/NERServer\$1.class \
 edu/stanford/nlp/ie/NERServer\$NERClient.class \
 edu/stanford/nlp/ie/NERServer\$Session.class \
 edu/stanford/nlp/ie/SeminarsPrior.class \
 edu/stanford/nlp/ie/UniformPrior.class \
 edu/stanford/nlp/ie/crf/CRFBiasedClassifier.class \
 edu/stanford/nlp/ie/crf/CRFBiasedClassifier\$CRFBiasedClassifierOptimizer.class \
 edu/stanford/nlp/ie/crf/CRFClassifier.class \
 edu/stanford/nlp/ie/crf/CRFClassifier\$TestSequenceModel.class \
 edu/stanford/nlp/ie/crf/CRFClassifierEvaluator.class \
 edu/stanford/nlp/ie/crf/CRFCliqueTree.class \
 edu/stanford/nlp/ie/crf/CRFDatum.class \
 edu/stanford/nlp/ie/crf/CRFFeatureExporter.class \
 edu/stanford/nlp/ie/crf/CRFLabel.class \
 edu/stanford/nlp/ie/crf/CRFLogConditionalObjectiveFloatFunction.class \
 edu/stanford/nlp/ie/crf/CRFLogConditionalObjectiveFunction.class \
 edu/stanford/nlp/ie/crf/FactorTable.class \
 edu/stanford/nlp/ie/crf/FloatFactorTable.class \
 edu/stanford/nlp/ie/crf/NERGUI.class \
 edu/stanford/nlp/ie/crf/NERGUI\$1.class \
 edu/stanford/nlp/ie/crf/NERGUI\$ActionPerformer.class \
 edu/stanford/nlp/ie/crf/NERGUI\$ColorIcon.class \
 edu/stanford/nlp/ie/crf/NERGUI\$InputListener.class \
 edu/stanford/nlp/ie/demo/NERDemo.class \
 edu/stanford/nlp/ie/ner/CMMClassifier.class \
 edu/stanford/nlp/ie/ner/CMMClassifier\$Scorer.class \
 edu/stanford/nlp/ie/pascal/AcronymModel.class \
 edu/stanford/nlp/ie/pascal/AcronymModel\$AfterAligned.class \
 edu/stanford/nlp/ie/pascal/AcronymModel\$AlignedPerWord.class \
 edu/stanford/nlp/ie/pascal/AcronymModel\$BegWord.class \
 edu/stanford/nlp/ie/pascal/AcronymModel\$EndWord.class \
 edu/stanford/nlp/ie/pascal/AcronymModel\$Feature.class \
 edu/stanford/nlp/ie/pascal/AcronymModel\$LettersAligned.class \
 edu/stanford/nlp/ie/pascal/AcronymModel\$SyllableBoundary.class \
 edu/stanford/nlp/ie/pascal/AcronymModel\$WordsSkipped.class \
 edu/stanford/nlp/ie/pascal/Alignment.class \
 edu/stanford/nlp/ie/pascal/AlignmentFactory.class \
 edu/stanford/nlp/ie/pascal/CliqueTemplates.class \
 edu/stanford/nlp/ie/pascal/DateTemplate.class \
 edu/stanford/nlp/ie/pascal/DefaultTeXHyphenData.class \
 edu/stanford/nlp/ie/pascal/InfoTemplate.class \
 edu/stanford/nlp/ie/pascal/PascalTemplate.class \
 edu/stanford/nlp/ie/pascal/Prior.class \
 edu/stanford/nlp/ie/pascal/RelationalModel.class \
 edu/stanford/nlp/ie/pascal/TeXHyphenator.class \
 edu/stanford/nlp/ie/pascal/TeXHyphenator\$1.class \
 edu/stanford/nlp/ie/pascal/TeXHyphenator\$Node.class \
 edu/stanford/nlp/international/morph/MorphoFeatureSpecification.class \
 edu/stanford/nlp/international/morph/MorphoFeatureSpecification\$MorphoFeatureType.class \
 edu/stanford/nlp/international/morph/MorphoFeatures.class \
 edu/stanford/nlp/io/BZip2PipedOutputStream.class \
 edu/stanford/nlp/io/EncodingFileReader.class \
 edu/stanford/nlp/io/EncodingPrintWriter.class \
 edu/stanford/nlp/io/EncodingPrintWriter\$err.class \
 edu/stanford/nlp/io/EncodingPrintWriter\$out.class \
 edu/stanford/nlp/io/ExtensionFileFilter.class \
 edu/stanford/nlp/io/IOUtils.class \
 edu/stanford/nlp/io/IOUtils\$1.class \
 edu/stanford/nlp/io/IOUtils\$1\$1.class \
 edu/stanford/nlp/io/IOUtils\$2.class \
 edu/stanford/nlp/io/IOUtils\$2\$1.class \
 edu/stanford/nlp/io/NumberRangesFileFilter.class \
 edu/stanford/nlp/io/RegExFileFilter.class \
 edu/stanford/nlp/io/RuntimeIOException.class \
 edu/stanford/nlp/ling/AnnotationLookup.class \
 edu/stanford/nlp/ling/AnnotationLookup\$KeyLookup.class \
 edu/stanford/nlp/ling/AnnotationLookup\$KeyLookup\$1.class \
 edu/stanford/nlp/ling/BasicDatum.class \
 edu/stanford/nlp/ling/CategoryWordTag.class \
 edu/stanford/nlp/ling/CategoryWordTag\$LabelFactoryHolder.class \
 edu/stanford/nlp/ling/CategoryWordTagFactory.class \
 edu/stanford/nlp/ling/CoreAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AbbrAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AbgeneAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AbstrAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AfterAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AnswerObjectAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$AntecedentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ArgDescendentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ArgumentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BagOfWordsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BeforeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BeginIndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BestCliquesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$BestFullAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CalendarAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CategoryAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CategoryFunctionalTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CharAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CharacterOffsetBeginAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CharacterOffsetEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseCharAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseIsSegmentedAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseOrigSegAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChineseSegAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ChunkAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLDepAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLDepParentIndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLDepTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLPredicateAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoNLLSRLAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CoarseTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CommonWordsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ContextsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CopyAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CostMagnificationAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$CovertIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$D2_LBeginAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$D2_LEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$D2_LMiddleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DayAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DependentsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DictAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DistSimAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DoAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DocDateAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DocIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$DomainAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EndIndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EntityClassAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EntityRuleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$EntityTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FeaturesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FemaleGazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FirstChildAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ForcedSentenceEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$FreqAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GazetteerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GenericTokensAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GeniaAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GoldAnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GovernorAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$GrandparentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$HaveAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$HeadWordStringAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$HeightAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IDFAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$INAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IndexAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$InterpretationAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IsDateRangeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$IsURLAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LBeginAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LEndAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LMiddleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LabelAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LabelWeightAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LastGazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LastTaggedAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LeftChildrenNodeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LeftTermAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LemmaAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$LengthAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MaleGazAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MarkingAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MonthAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoCaseAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoGenAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoNumAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$MorphoPersAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NERIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NamedEntityTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NeighborsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NormalizedNamedEntityTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NotAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumTxtSentencesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericCompositeObjectAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericCompositeTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericCompositeValueAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericObjectAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericTypeAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumericValueAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$NumerizedTokensAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$OriginalAnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$OriginalCharAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$OriginalTextAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParaPositionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParagraphAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParagraphsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ParentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PartOfSpeechAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PercentAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PhraseWordsAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PhraseWordsTagAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PolarityAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PositionAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PossibleAnswersAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PredictedAnswerAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PrevChildAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$PriorAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ProjectedCategoryAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$ProtoAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$RoleAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SRLIDAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SRLInstancesAnnotation.class \
 edu/stanford/nlp/ling/CoreAnnotations\$SRL_ID.class \
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 edu/stanford/nlp/util/BinaryHeapPriorityQueue\$Entry.class \
 edu/stanford/nlp/util/ByteStreamGobbler.class \
 edu/stanford/nlp/util/CollectionFactory.class \
 edu/stanford/nlp/util/CollectionFactory\$ArrayListFactory.class \
 edu/stanford/nlp/util/CollectionFactory\$HashSetFactory.class \
 edu/stanford/nlp/util/CollectionFactory\$LinkedListFactory.class \
 edu/stanford/nlp/util/CollectionFactory\$SizedArrayListFactory.class \
 edu/stanford/nlp/util/CollectionFactory\$TreeSetFactory.class \
 edu/stanford/nlp/util/CollectionUtils.class \
 edu/stanford/nlp/util/CollectionUtils\$1.class \
 edu/stanford/nlp/util/CollectionValuedMap.class \
 edu/stanford/nlp/util/ConcatenationIterator.class \
 edu/stanford/nlp/util/CoreMap.class \
 edu/stanford/nlp/util/DeltaCollectionValuedMap.class \
 edu/stanford/nlp/util/DeltaCollectionValuedMap\$1.class \
 edu/stanford/nlp/util/DeltaCollectionValuedMap\$1\$1.class \
 edu/stanford/nlp/util/DeltaCollectionValuedMap\$1\$2.class \
 edu/stanford/nlp/util/DeltaMap.class \
 edu/stanford/nlp/util/DeltaMap\$1.class \
 edu/stanford/nlp/util/DeltaMap\$1\$1.class \
 edu/stanford/nlp/util/DeltaMap\$1\$1NullingIterator.class \
 edu/stanford/nlp/util/DeltaMap\$1\$2.class \
 edu/stanford/nlp/util/DeltaMap\$SimpleEntry.class \
 edu/stanford/nlp/util/ErasureUtils.class \
 edu/stanford/nlp/util/Factory.class \
 edu/stanford/nlp/util/FilePathProcessor.class \
 edu/stanford/nlp/util/FileProcessor.class \
 edu/stanford/nlp/util/Filter.class \
 edu/stanford/nlp/util/FilteredIterator.class \
 edu/stanford/nlp/util/FilteredIterator\$1.class \
 edu/stanford/nlp/util/Filters.class \
 edu/stanford/nlp/util/Filters\$CategoricalFilter.class \
 edu/stanford/nlp/util/Filters\$CollectionAcceptFilter.class \
 edu/stanford/nlp/util/Filters\$CombinedFilter.class \
 edu/stanford/nlp/util/Filters\$NegatedFilter.class \
 edu/stanford/nlp/util/FixedPrioritiesPriorityQueue.class \
 edu/stanford/nlp/util/Function.class \
 edu/stanford/nlp/util/Generics.class \
 edu/stanford/nlp/util/HasInterval.class \
 edu/stanford/nlp/util/HasInterval\$1.class \
 edu/stanford/nlp/util/HashIndex.class \
 edu/stanford/nlp/util/HashIndex\$1.class \
 edu/stanford/nlp/util/HashIndex\$2.class \
 edu/stanford/nlp/util/HashableCoreMap.class \
 edu/stanford/nlp/util/HashableCoreMap\$HashableCoreMapException.class \
 edu/stanford/nlp/util/Heap.class \
 edu/stanford/nlp/util/IdentityHashSet.class \
 edu/stanford/nlp/util/Index.class \
 edu/stanford/nlp/util/IntPair.class
jar uf /juicy/u44/u/nlp/distrib/stanford-ner-2012-05-22/stanford-ner-2012-05-22.jar edu/stanford/nlp/util/IntQuadruple.class \
 edu/stanford/nlp/util/IntTriple.class \
 edu/stanford/nlp/util/IntTuple.class \
 edu/stanford/nlp/util/IntUni.class \
 edu/stanford/nlp/util/Interner.class \
 edu/stanford/nlp/util/Interval.class \
 edu/stanford/nlp/util/Interval\$RelType.class \
 edu/stanford/nlp/util/IterableIterator.class \
 edu/stanford/nlp/util/LowercaseFunction.class \
 edu/stanford/nlp/util/MapFactory.class \
 edu/stanford/nlp/util/MapFactory\$1.class \
 edu/stanford/nlp/util/MapFactory\$ArrayMapFactory.class \
 edu/stanford/nlp/util/MapFactory\$HashMapFactory.class \
 edu/stanford/nlp/util/MapFactory\$IdentityHashMapFactory.class \
 edu/stanford/nlp/util/MapFactory\$LinkedHashMapFactory.class \
 edu/stanford/nlp/util/MapFactory\$TreeMapFactory.class \
 edu/stanford/nlp/util/MapFactory\$WeakHashMapFactory.class \
 edu/stanford/nlp/util/Maps.class \
 edu/stanford/nlp/util/Maps\$1.class \
 edu/stanford/nlp/util/MemoryMonitor.class \
 edu/stanford/nlp/util/MemoryMonitor\$PeakMemoryMonitor.class \
 edu/stanford/nlp/util/MetaClass.class \
 edu/stanford/nlp/util/MetaClass\$1.class \
 edu/stanford/nlp/util/MetaClass\$ClassCreationException.class \
 edu/stanford/nlp/util/MetaClass\$ClassFactory.class \
 edu/stanford/nlp/util/MetaClass\$ConstructorNotFoundException.class \
 edu/stanford/nlp/util/MutableDouble.class \
 edu/stanford/nlp/util/MutableInteger.class \
 edu/stanford/nlp/util/PaddedList.class \
 edu/stanford/nlp/util/Pair.class \
 edu/stanford/nlp/util/Pair\$1.class \
 edu/stanford/nlp/util/Pair\$MutableInternedPair.class \
 edu/stanford/nlp/util/PriorityQueue.class \
 edu/stanford/nlp/util/PropertiesUtils.class \
 edu/stanford/nlp/util/ReflectionLoading.class \
 edu/stanford/nlp/util/ReflectionLoading\$ReflectionLoadingException.class \
 edu/stanford/nlp/util/Scored.class \
 edu/stanford/nlp/util/ScoredComparator.class \
 edu/stanford/nlp/util/ScoredObject.class \
 edu/stanford/nlp/util/Sets.class \
 edu/stanford/nlp/util/StreamGobbler.class \
 edu/stanford/nlp/util/StringUtils.class \
 edu/stanford/nlp/util/StringUtils\$1.class \
 edu/stanford/nlp/util/SystemUtils.class \
 edu/stanford/nlp/util/SystemUtils\$ProcessException.class \
 edu/stanford/nlp/util/SystemUtils\$ProcessOutputStream.class \
 edu/stanford/nlp/util/SystemUtils\$WriterThread.class \
 edu/stanford/nlp/util/Timing.class \
 edu/stanford/nlp/util/Triple.class \
 edu/stanford/nlp/util/TypesafeMap.class \
 edu/stanford/nlp/util/TypesafeMap\$Key.class \
 edu/stanford/nlp/util/XMLUtils.class \
 edu/stanford/nlp/util/XMLUtils\$1.class \
 edu/stanford/nlp/util/XMLUtils\$SAXErrorHandler.class \
 edu/stanford/nlp/util/XMLUtils\$XMLTag.class \
 edu/stanford/nlp/util/concurrent/SynchronizedInterner.class \
 edu/stanford/nlp/util/concurrent/SynchronizedInterner\$1.class \
 edu/stanford/nlp/util/logging/Color.class \
 edu/stanford/nlp/util/logging/LogRecordHandler.class \
 edu/stanford/nlp/util/logging/OutputHandler.class \
 edu/stanford/nlp/util/logging/OutputHandler\$1.class \
 edu/stanford/nlp/util/logging/OutputHandler\$TrackInfo.class \
 edu/stanford/nlp/util/logging/PrettyLoggable.class \
 edu/stanford/nlp/util/logging/PrettyLogger.class \
 edu/stanford/nlp/util/logging/PrettyLogger\$1.class \
 edu/stanford/nlp/util/logging/Redwood.class \
 edu/stanford/nlp/util/logging/Redwood\$1.class \
 edu/stanford/nlp/util/logging/Redwood\$2.class \
 edu/stanford/nlp/util/logging/Redwood\$3.class \
 edu/stanford/nlp/util/logging/Redwood\$4.class \
 edu/stanford/nlp/util/logging/Redwood\$5.class \
 edu/stanford/nlp/util/logging/Redwood\$6.class \
 edu/stanford/nlp/util/logging/Redwood\$7.class \
 edu/stanford/nlp/util/logging/Redwood\$ConsoleHandler.class \
 edu/stanford/nlp/util/logging/Redwood\$FileHandler.class \
 edu/stanford/nlp/util/logging/Redwood\$Flag.class \
 edu/stanford/nlp/util/logging/Redwood\$MessageType.class \
 edu/stanford/nlp/util/logging/Redwood\$Record.class \
 edu/stanford/nlp/util/logging/Redwood\$Record\$1.class \
 edu/stanford/nlp/util/logging/Redwood\$RecordHandlerTree.class \
 edu/stanford/nlp/util/logging/Redwood\$RecordHandlerTree\$1.class \
 edu/stanford/nlp/util/logging/Redwood\$RedwoodChannels.class \
 edu/stanford/nlp/util/logging/Redwood\$Util.class \
 edu/stanford/nlp/util/logging/Redwood\$Util\$1.class \
 edu/stanford/nlp/util/logging/Redwood\$Util\$Tantrum.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$1.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$10.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$11.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$12.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$12\$1.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$13.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$14.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$15.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$2.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$3.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$4.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$5.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$6.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$7.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$8.class \
 edu/stanford/nlp/util/logging/RedwoodConfiguration\$9.class \
 edu/stanford/nlp/util/logging/RedwoodPrintStream.class \
 edu/stanford/nlp/util/logging/RedwoodPrintStream\$1.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$1.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$ApproximateRepeatSemantics.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$ExactRepeatSemantics.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$PendingType.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$RepeatSemantics.class \
 edu/stanford/nlp/util/logging/RepeatedRecordHandler\$RepeatedRecordInfo.class \
 edu/stanford/nlp/util/logging/Style.class \
 edu/stanford/nlp/util/logging/VisibilityHandler.class \
 edu/stanford/nlp/util/logging/VisibilityHandler\$1.class \
 edu/stanford/nlp/util/logging/VisibilityHandler\$State.class \
 

Source files:

	edu/stanford/nlp/classify/AbstractLinearClassifierFactory.java
	edu/stanford/nlp/classify/AdaptedGaussianPriorObjectiveFunction.java
	edu/stanford/nlp/classify/BiasedLogConditionalObjectiveFunction.java
	edu/stanford/nlp/classify/Classifier.java
	edu/stanford/nlp/classify/ClassifierCreator.java
	edu/stanford/nlp/classify/ClassifierFactory.java
	edu/stanford/nlp/classify/CrossValidator.java
	edu/stanford/nlp/classify/Dataset.java
	edu/stanford/nlp/classify/GeneralDataset.java
	edu/stanford/nlp/classify/GeneralizedExpectationObjectiveFunction.java
	edu/stanford/nlp/classify/LinearClassifier.java
	edu/stanford/nlp/classify/LinearClassifierFactory.java
	edu/stanford/nlp/classify/LogConditionalObjectiveFunction.java
	edu/stanford/nlp/classify/LogPrior.java
	edu/stanford/nlp/classify/NBLinearClassifierFactory.java
	edu/stanford/nlp/classify/PRCurve.java
	edu/stanford/nlp/classify/ProbabilisticClassifier.java
	edu/stanford/nlp/classify/ProbabilisticClassifierCreator.java
	edu/stanford/nlp/classify/RVFClassifier.java
	edu/stanford/nlp/classify/RVFDataset.java
	edu/stanford/nlp/classify/SVMLightClassifier.java
	edu/stanford/nlp/classify/SVMLightClassifierFactory.java
	edu/stanford/nlp/classify/SemiSupervisedLogConditionalObjectiveFunction.java
	edu/stanford/nlp/classify/WeightedDataset.java
	edu/stanford/nlp/fsm/DFSA.java
	edu/stanford/nlp/fsm/DFSAState.java
	edu/stanford/nlp/fsm/DFSATransition.java
	edu/stanford/nlp/ie/AbstractSequenceClassifier.java
	edu/stanford/nlp/ie/AcquisitionsPrior.java
	edu/stanford/nlp/ie/ClassifierCombiner.java
	edu/stanford/nlp/ie/EmpiricalNERPrior.java
	edu/stanford/nlp/ie/EntityCachingAbstractSequencePrior.java
	edu/stanford/nlp/ie/NERFeatureFactory.java
	edu/stanford/nlp/ie/NERServer.java
	edu/stanford/nlp/ie/SeminarsPrior.java
	edu/stanford/nlp/ie/UniformPrior.java
	edu/stanford/nlp/ie/crf/CRFBiasedClassifier.java
	edu/stanford/nlp/ie/crf/CRFClassifier.java
	edu/stanford/nlp/ie/crf/CRFClassifierEvaluator.java
	edu/stanford/nlp/ie/crf/CRFCliqueTree.java
	edu/stanford/nlp/ie/crf/CRFDatum.java
	edu/stanford/nlp/ie/crf/CRFFeatureExporter.java
	edu/stanford/nlp/ie/crf/CRFLabel.java
	edu/stanford/nlp/ie/crf/CRFLogConditionalObjectiveFloatFunction.java
	edu/stanford/nlp/ie/crf/CRFLogConditionalObjectiveFunction.java
	edu/stanford/nlp/ie/crf/FactorTable.java
	edu/stanford/nlp/ie/crf/FloatFactorTable.java
	edu/stanford/nlp/ie/crf/NERGUI.java
	edu/stanford/nlp/ie/crf/ner-manifest.txt
	edu/stanford/nlp/ie/crf/package.html
	edu/stanford/nlp/ie/demo/NERDemo.java
	edu/stanford/nlp/ie/ner/CMMClassifier.java
	edu/stanford/nlp/ie/package.html
	edu/stanford/nlp/ie/pascal/AcronymModel.java
	edu/stanford/nlp/ie/pascal/Alignment.java
	edu/stanford/nlp/ie/pascal/AlignmentFactory.java
	edu/stanford/nlp/ie/pascal/CliqueTemplates.java
	edu/stanford/nlp/ie/pascal/DateTemplate.java
	edu/stanford/nlp/ie/pascal/DefaultTeXHyphenData.java
	edu/stanford/nlp/ie/pascal/InfoTemplate.java
	edu/stanford/nlp/ie/pascal/PascalTemplate.java
	edu/stanford/nlp/ie/pascal/Prior.java
	edu/stanford/nlp/ie/pascal/RelationalModel.java
	edu/stanford/nlp/ie/pascal/TeXHyphenator.java
	edu/stanford/nlp/international/morph/MorphoFeatureSpecification.java
	edu/stanford/nlp/international/morph/MorphoFeatures.java
	edu/stanford/nlp/io/BZip2PipedOutputStream.java
	edu/stanford/nlp/io/EncodingFileReader.java
	edu/stanford/nlp/io/EncodingPrintWriter.java
	edu/stanford/nlp/io/ExtensionFileFilter.java
	edu/stanford/nlp/io/IOUtils.java
	edu/stanford/nlp/io/NumberRangesFileFilter.java
	edu/stanford/nlp/io/RegExFileFilter.java
	edu/stanford/nlp/io/RuntimeIOException.java
	edu/stanford/nlp/ling/AnnotationLookup.java
	edu/stanford/nlp/ling/BasicDatum.java
	edu/stanford/nlp/ling/CategoryWordTag.java
	edu/stanford/nlp/ling/CategoryWordTagFactory.java
	edu/stanford/nlp/ling/CoreAnnotation.java
	edu/stanford/nlp/ling/CoreAnnotations.java
	edu/stanford/nlp/ling/CoreLabel.java
	edu/stanford/nlp/ling/CyclicCoreLabel.java
	edu/stanford/nlp/ling/Datum.java
	edu/stanford/nlp/ling/Document.java
	edu/stanford/nlp/ling/Featurizable.java
	edu/stanford/nlp/ling/HasCategory.java
	edu/stanford/nlp/ling/HasContext.java
	edu/stanford/nlp/ling/HasIndex.java
	edu/stanford/nlp/ling/HasOffset.java
	edu/stanford/nlp/ling/HasTag.java
	edu/stanford/nlp/ling/HasWord.java
	edu/stanford/nlp/ling/Label.java
	edu/stanford/nlp/ling/LabelFactory.java
	edu/stanford/nlp/ling/Labeled.java
	edu/stanford/nlp/ling/LabeledWord.java
	edu/stanford/nlp/ling/RVFDatum.java
	edu/stanford/nlp/ling/Sentence.java
	edu/stanford/nlp/ling/StringLabel.java
	edu/stanford/nlp/ling/StringLabelFactory.java
	edu/stanford/nlp/ling/TaggedWord.java
	edu/stanford/nlp/ling/TaggedWordFactory.java
	edu/stanford/nlp/ling/ValueLabel.java
	edu/stanford/nlp/ling/Word.java
	edu/stanford/nlp/ling/WordFactory.java
	edu/stanford/nlp/ling/WordLemmaTag.java
	edu/stanford/nlp/ling/WordLemmaTagFactory.java
	edu/stanford/nlp/ling/WordTag.java
	edu/stanford/nlp/ling/WordTagFactory.java
	edu/stanford/nlp/math/ADMath.java
	edu/stanford/nlp/math/ArrayMath.java
	edu/stanford/nlp/math/DoubleAD.java
	edu/stanford/nlp/math/SloppyMath.java
	edu/stanford/nlp/maxent/Convert.java
	edu/stanford/nlp/objectbank/DelimitRegExIterator.java
	edu/stanford/nlp/objectbank/IdentityFunction.java
	edu/stanford/nlp/objectbank/IteratorFromReaderFactory.java
	edu/stanford/nlp/objectbank/LineIterator.java
	edu/stanford/nlp/objectbank/ObjectBank.java
	edu/stanford/nlp/objectbank/ReaderIteratorFactory.java
	edu/stanford/nlp/objectbank/ResettableReaderIteratorFactory.java
	edu/stanford/nlp/objectbank/TokenizerFactory.java
	edu/stanford/nlp/objectbank/XMLBeginEndIterator.java
	edu/stanford/nlp/optimization/AbstractCachingDiffFloatFunction.java
	edu/stanford/nlp/optimization/AbstractCachingDiffFunction.java
	edu/stanford/nlp/optimization/AbstractStochasticCachingDiffFunction.java
	edu/stanford/nlp/optimization/AbstractStochasticCachingDiffUpdateFunction.java
	edu/stanford/nlp/optimization/CGMinimizer.java
	edu/stanford/nlp/optimization/CmdEvaluator.java
	edu/stanford/nlp/optimization/DiffFloatFunction.java
	edu/stanford/nlp/optimization/DiffFunction.java
	edu/stanford/nlp/optimization/Evaluator.java
	edu/stanford/nlp/optimization/FloatFunction.java
	edu/stanford/nlp/optimization/Function.java
	edu/stanford/nlp/optimization/GoldenSectionLineSearch.java
	edu/stanford/nlp/optimization/HasEvaluators.java
	edu/stanford/nlp/optimization/HasFloatInitial.java
	edu/stanford/nlp/optimization/HasInitial.java
	edu/stanford/nlp/optimization/HybridMinimizer.java
	edu/stanford/nlp/optimization/LineSearcher.java
	edu/stanford/nlp/optimization/MemoryEvaluator.java
	edu/stanford/nlp/optimization/Minimizer.java
	edu/stanford/nlp/optimization/QNMinimizer.java
	edu/stanford/nlp/optimization/ResultStoringFloatMonitor.java
	edu/stanford/nlp/optimization/ResultStoringMonitor.java
	edu/stanford/nlp/optimization/SGDMinimizer.java
	edu/stanford/nlp/optimization/SGDToQNMinimizer.java
	edu/stanford/nlp/optimization/SMDMinimizer.java
	edu/stanford/nlp/optimization/SQNMinimizer.java
	edu/stanford/nlp/optimization/ScaledSGDMinimizer.java
	edu/stanford/nlp/optimization/StochasticCalculateMethods.java
	edu/stanford/nlp/optimization/StochasticDiffFunctionTester.java
	edu/stanford/nlp/optimization/StochasticInPlaceMinimizer.java
	edu/stanford/nlp/optimization/StochasticMinimizer.java
	edu/stanford/nlp/parser/KBestViterbiParser.java
	edu/stanford/nlp/parser/Parser.java
	edu/stanford/nlp/parser/ViterbiParser.java
	edu/stanford/nlp/parser/lexparser/AbstractDependencyGrammar.java
	edu/stanford/nlp/parser/lexparser/AbstractTreeExtractor.java
	edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams.java
	edu/stanford/nlp/parser/lexparser/BaseLexicon.java
	edu/stanford/nlp/parser/lexparser/BasicCategoryTagProjection.java
	edu/stanford/nlp/parser/lexparser/DependencyGrammar.java
	edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams.java
	edu/stanford/nlp/parser/lexparser/Extractor.java
	edu/stanford/nlp/parser/lexparser/IntDependency.java
	edu/stanford/nlp/parser/lexparser/IntTaggedWord.java
	edu/stanford/nlp/parser/lexparser/Lexicon.java
	edu/stanford/nlp/parser/lexparser/MLEDependencyGrammar.java
	edu/stanford/nlp/parser/lexparser/MLEDependencyGrammarExtractor.java
	edu/stanford/nlp/parser/lexparser/Options.java
	edu/stanford/nlp/parser/lexparser/TagProjection.java
	edu/stanford/nlp/parser/lexparser/TestOptions.java
	edu/stanford/nlp/parser/lexparser/TestTagProjection.java
	edu/stanford/nlp/parser/lexparser/TrainOptions.java
	edu/stanford/nlp/parser/lexparser/TreeCollinizer.java
	edu/stanford/nlp/parser/lexparser/TreebankLangParserParams.java
	edu/stanford/nlp/parser/lexparser/UnknownWordModel.java
	edu/stanford/nlp/parser/lexparser/UnknownWordModelTrainer.java
	edu/stanford/nlp/parser/metrics/AbstractEval.java
	edu/stanford/nlp/parser/tools/PunctEquivalenceClasser.java
	edu/stanford/nlp/pipeline/Annotation.java
	edu/stanford/nlp/pipeline/ChunkAnnotationUtils.java
	edu/stanford/nlp/pipeline/CoreMapAttributeAggregator.java
	edu/stanford/nlp/pipeline/LabeledChunkIdentifier.java
	edu/stanford/nlp/process/AbstractTokenizer.java
	edu/stanford/nlp/process/Americanize.java
	edu/stanford/nlp/process/CoreLabelTokenFactory.java
	edu/stanford/nlp/process/CoreTokenFactory.java
	edu/stanford/nlp/process/DocumentPreprocessor.java
	edu/stanford/nlp/process/DocumentProcessor.java
	edu/stanford/nlp/process/LexedTokenFactory.java
	edu/stanford/nlp/process/ListProcessor.java
	edu/stanford/nlp/process/Morpha.java
	edu/stanford/nlp/process/Morphology.java
	edu/stanford/nlp/process/PTB2TextLexer.java
	edu/stanford/nlp/process/PTBLexer.flex
	edu/stanford/nlp/process/PTBLexer.java
	edu/stanford/nlp/process/PTBTokenizer.java
	edu/stanford/nlp/process/SerializableFunction.java
	edu/stanford/nlp/process/Tokenizer.java
	edu/stanford/nlp/process/TokenizerAdapter.java
	edu/stanford/nlp/process/WhitespaceLexer.java
	edu/stanford/nlp/process/WhitespaceTokenizer.java
	edu/stanford/nlp/process/WordShapeClassifier.java
	edu/stanford/nlp/process/WordToSentenceProcessor.java
	edu/stanford/nlp/process/WordTokenFactory.java
	edu/stanford/nlp/sequences/BeamBestSequenceFinder.java
	edu/stanford/nlp/sequences/BestSequenceFinder.java
	edu/stanford/nlp/sequences/Clique.java
	edu/stanford/nlp/sequences/CoNLLDocumentReaderAndWriter.java
	edu/stanford/nlp/sequences/ColumnDocumentReaderAndWriter.java
	edu/stanford/nlp/sequences/CoolingSchedule.java
	edu/stanford/nlp/sequences/DocumentReaderAndWriter.java
	edu/stanford/nlp/sequences/ExactBestSequenceFinder.java
	edu/stanford/nlp/sequences/FactoredSequenceListener.java
	edu/stanford/nlp/sequences/FactoredSequenceModel.java
	edu/stanford/nlp/sequences/FeatureFactory.java
	edu/stanford/nlp/sequences/KBestSequenceFinder.java
	edu/stanford/nlp/sequences/LatticeWriter.java
	edu/stanford/nlp/sequences/ObjectBankWrapper.java
	edu/stanford/nlp/sequences/PlainTextDocumentReaderAndWriter.java
	edu/stanford/nlp/sequences/SeqClassifierFlags.java
	edu/stanford/nlp/sequences/SequenceGibbsSampler.java
	edu/stanford/nlp/sequences/SequenceListener.java
	edu/stanford/nlp/sequences/SequenceModel.java
	edu/stanford/nlp/sequences/SequenceSampler.java
	edu/stanford/nlp/sequences/ViterbiSearchGraphBuilder.java
	edu/stanford/nlp/stats/AbstractCounter.java
	edu/stanford/nlp/stats/AccuracyStats.java
	edu/stanford/nlp/stats/ClassicCounter.java
	edu/stanford/nlp/stats/Counter.java
	edu/stanford/nlp/stats/Counters.java
	edu/stanford/nlp/stats/Distribution.java
	edu/stanford/nlp/stats/EquivalenceClasser.java
	edu/stanford/nlp/stats/GeneralizedCounter.java
	edu/stanford/nlp/stats/IntCounter.java
	edu/stanford/nlp/stats/MultiClassAccuracyStats.java
	edu/stanford/nlp/stats/MultiClassChunkEvalStats.java
	edu/stanford/nlp/stats/MultiClassPrecisionRecallExtendedStats.java
	edu/stanford/nlp/stats/MultiClassPrecisionRecallStats.java
	edu/stanford/nlp/stats/ProbabilityDistribution.java
	edu/stanford/nlp/stats/Sampler.java
	edu/stanford/nlp/stats/Scorer.java
	edu/stanford/nlp/stats/SimpleGoodTuring.java
	edu/stanford/nlp/stats/TwoDimensionalCounter.java
	edu/stanford/nlp/stats/TwoDimensionalCounterInterface.java
	edu/stanford/nlp/trees/AbstractCollinsHeadFinder.java
	edu/stanford/nlp/trees/AbstractTreebankLanguagePack.java
	edu/stanford/nlp/trees/BobChrisTreeNormalizer.java
	edu/stanford/nlp/trees/CollinsHeadFinder.java
	edu/stanford/nlp/trees/CollocationFinder.java
	edu/stanford/nlp/trees/CompositeTreeTransformer.java
	edu/stanford/nlp/trees/CompositeTreebank.java
	edu/stanford/nlp/trees/Constituent.java
	edu/stanford/nlp/trees/ConstituentFactory.java
	edu/stanford/nlp/trees/CoordinationTransformer.java
	edu/stanford/nlp/trees/Dependencies.java
	edu/stanford/nlp/trees/Dependency.java
	edu/stanford/nlp/trees/DependencyFactory.java
	edu/stanford/nlp/trees/DependencyPrinter.java
	edu/stanford/nlp/trees/DependencyReader.java
	edu/stanford/nlp/trees/DependencyTreeTransformer.java
	edu/stanford/nlp/trees/DependencyTyper.java
	edu/stanford/nlp/trees/DiskTreebank.java
	edu/stanford/nlp/trees/EnglishGrammaticalRelations.java
	edu/stanford/nlp/trees/EnglishGrammaticalStructure.java
	edu/stanford/nlp/trees/GrammaticalRelation.java
	edu/stanford/nlp/trees/GrammaticalStructure.java
	edu/stanford/nlp/trees/GrammaticalStructureFactory.java
	edu/stanford/nlp/trees/GrammaticalStructureFromDependenciesFactory.java
	edu/stanford/nlp/trees/HeadFinder.java
	edu/stanford/nlp/trees/Labeled.java
	edu/stanford/nlp/trees/LabeledConstituent.java
	edu/stanford/nlp/trees/LabeledScoredTreeFactory.java
	edu/stanford/nlp/trees/LabeledScoredTreeNode.java
	edu/stanford/nlp/trees/LabeledScoredTreeReaderFactory.java
	edu/stanford/nlp/trees/MemoryTreebank.java
	edu/stanford/nlp/trees/ModCollinsHeadFinder.java
	edu/stanford/nlp/trees/NPTmpRetainingTreeNormalizer.java
	edu/stanford/nlp/trees/NamedDependency.java
	edu/stanford/nlp/trees/PennTreeReader.java
	edu/stanford/nlp/trees/PennTreeReaderFactory.java
	edu/stanford/nlp/trees/PennTreebankLanguagePack.java
	edu/stanford/nlp/trees/PennTreebankTokenizer.java
	edu/stanford/nlp/trees/QPTreeTransformer.java
	edu/stanford/nlp/trees/SemanticHeadFinder.java
	edu/stanford/nlp/trees/SimpleConstituent.java
	edu/stanford/nlp/trees/SimpleConstituentFactory.java
	edu/stanford/nlp/trees/SimpleTree.java
	edu/stanford/nlp/trees/SimpleTreeFactory.java
	edu/stanford/nlp/trees/TransformingTreebank.java
	edu/stanford/nlp/trees/Tree.java
	edu/stanford/nlp/trees/TreeCoreAnnotations.java
	edu/stanford/nlp/trees/TreeFactory.java
	edu/stanford/nlp/trees/TreeFunctions.java
	edu/stanford/nlp/trees/TreeGraph.java
	edu/stanford/nlp/trees/TreeGraphNode.java
	edu/stanford/nlp/trees/TreeGraphNodeFactory.java
	edu/stanford/nlp/trees/TreeNormalizer.java
	edu/stanford/nlp/trees/TreePrint.java
	edu/stanford/nlp/trees/TreeReader.java
	edu/stanford/nlp/trees/TreeReaderFactory.java
	edu/stanford/nlp/trees/TreeTokenizerFactory.java
	edu/stanford/nlp/trees/TreeTransformer.java
	edu/stanford/nlp/trees/TreeVisitor.java
	edu/stanford/nlp/trees/Treebank.java
	edu/stanford/nlp/trees/TreebankFactory.java
	edu/stanford/nlp/trees/TreebankLanguagePack.java
	edu/stanford/nlp/trees/Trees.java
	edu/stanford/nlp/trees/TypedDependency.java
	edu/stanford/nlp/trees/UnnamedConcreteDependency.java
	edu/stanford/nlp/trees/UnnamedDependency.java
	edu/stanford/nlp/trees/WordNetConnection.java
	edu/stanford/nlp/trees/WordStemmer.java
	edu/stanford/nlp/trees/international/pennchinese/CHTBLexer.java
	edu/stanford/nlp/trees/international/pennchinese/CHTBTokenizer.java
	edu/stanford/nlp/trees/international/pennchinese/CTBTreeReaderFactory.java
	edu/stanford/nlp/trees/international/pennchinese/ChineseEnglishWordMap.java
	edu/stanford/nlp/trees/international/pennchinese/ChineseHeadFinder.java
	edu/stanford/nlp/trees/international/pennchinese/ChineseTreebankLanguagePack.java
	edu/stanford/nlp/trees/international/pennchinese/FragDiscardingPennTreeReader.java
	edu/stanford/nlp/trees/tregex/CoordinationPattern.java
	edu/stanford/nlp/trees/tregex/DescriptionPattern.java
	edu/stanford/nlp/trees/tregex/Macros.java
	edu/stanford/nlp/trees/tregex/ParseException.java
	edu/stanford/nlp/trees/tregex/Relation.java
	edu/stanford/nlp/trees/tregex/SimpleCharStream.java
	edu/stanford/nlp/trees/tregex/Token.java
	edu/stanford/nlp/trees/tregex/TokenMgrError.java
	edu/stanford/nlp/trees/tregex/TregexMatcher.java
	edu/stanford/nlp/trees/tregex/TregexParseException.java
	edu/stanford/nlp/trees/tregex/TregexParser.java
	edu/stanford/nlp/trees/tregex/TregexParserConstants.java
	edu/stanford/nlp/trees/tregex/TregexParserTokenManager.java
	edu/stanford/nlp/trees/tregex/TregexPattern.java
	edu/stanford/nlp/trees/tregex/TregexPatternCompiler.java
	edu/stanford/nlp/trees/tregex/VariableStrings.java
	edu/stanford/nlp/trees/tregex/tsurgeon/AdjoinNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/AdjoinToFootNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/AdjoinToHeadNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/AuxiliaryTree.java
	edu/stanford/nlp/trees/tregex/tsurgeon/CoindexNodes.java
	edu/stanford/nlp/trees/tregex/tsurgeon/CoindexationGenerator.java
	edu/stanford/nlp/trees/tregex/tsurgeon/DeleteNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/ExciseNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/FetchNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/HoldTreeNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/InsertNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/JJTTsurgeonParserState.java
	edu/stanford/nlp/trees/tregex/tsurgeon/MoveNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/Node.java
	edu/stanford/nlp/trees/tregex/tsurgeon/ParseException.java
	edu/stanford/nlp/trees/tregex/tsurgeon/PruneNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/RelabelNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/ReplaceNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/SimpleCharStream.java
	edu/stanford/nlp/trees/tregex/tsurgeon/SimpleNode.java
	edu/stanford/nlp/trees/tregex/tsurgeon/Token.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TokenMgrError.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TreeLocation.java
	edu/stanford/nlp/trees/tregex/tsurgeon/Tsurgeon.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParseException.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParser.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParserConstants.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParserTokenManager.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonParserTreeConstants.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonPattern.java
	edu/stanford/nlp/trees/tregex/tsurgeon/TsurgeonPatternRoot.java
	edu/stanford/nlp/util/AbstractIterator.java
	edu/stanford/nlp/util/ArrayCoreMap.java
	edu/stanford/nlp/util/ArrayHeap.java
	edu/stanford/nlp/util/ArrayIterable.java
	edu/stanford/nlp/util/ArrayMap.java
	edu/stanford/nlp/util/ArrayUtils.java
	edu/stanford/nlp/util/Beam.java
	edu/stanford/nlp/util/BinaryHeapPriorityQueue.java
	edu/stanford/nlp/util/ByteStreamGobbler.java
	edu/stanford/nlp/util/CollectionFactory.java
	edu/stanford/nlp/util/CollectionUtils.java
	edu/stanford/nlp/util/CollectionValuedMap.java
	edu/stanford/nlp/util/ConcatenationIterator.java
	edu/stanford/nlp/util/CoreMap.java
	edu/stanford/nlp/util/DeltaCollectionValuedMap.java
	edu/stanford/nlp/util/DeltaMap.java
	edu/stanford/nlp/util/ErasureUtils.java
	edu/stanford/nlp/util/Factory.java
	edu/stanford/nlp/util/FilePathProcessor.java
	edu/stanford/nlp/util/FileProcessor.java
	edu/stanford/nlp/util/Filter.java
	edu/stanford/nlp/util/FilteredIterator.java
	edu/stanford/nlp/util/Filters.java
	edu/stanford/nlp/util/FixedPrioritiesPriorityQueue.java
	edu/stanford/nlp/util/Function.java
	edu/stanford/nlp/util/Generics.java
	edu/stanford/nlp/util/HasInterval.java
	edu/stanford/nlp/util/HashIndex.java
	edu/stanford/nlp/util/HashableCoreMap.java
	edu/stanford/nlp/util/Heap.java
	edu/stanford/nlp/util/IdentityHashSet.java
	edu/stanford/nlp/util/Index.java
	edu/stanford/nlp/util/IntPair.java
	edu/stanford/nlp/util/IntQuadruple.java
	edu/stanford/nlp/util/IntTriple.java
	edu/stanford/nlp/util/IntTuple.java
	edu/stanford/nlp/util/IntUni.java
	edu/stanford/nlp/util/Interner.java
	edu/stanford/nlp/util/Interval.java
	edu/stanford/nlp/util/IterableIterator.java
	edu/stanford/nlp/util/LowercaseFunction.java
	edu/stanford/nlp/util/MapFactory.java
	edu/stanford/nlp/util/Maps.java
	edu/stanford/nlp/util/MemoryMonitor.java
	edu/stanford/nlp/util/MetaClass.java
	edu/stanford/nlp/util/MutableDouble.java
	edu/stanford/nlp/util/MutableInteger.java
	edu/stanford/nlp/util/PaddedList.java
	edu/stanford/nlp/util/Pair.java
	edu/stanford/nlp/util/PriorityQueue.java
	edu/stanford/nlp/util/PropertiesUtils.java
	edu/stanford/nlp/util/ReflectionLoading.java
	edu/stanford/nlp/util/Scored.java
	edu/stanford/nlp/util/ScoredComparator.java
	edu/stanford/nlp/util/ScoredObject.java
	edu/stanford/nlp/util/Sets.java
	edu/stanford/nlp/util/StreamGobbler.java
	edu/stanford/nlp/util/StringUtils.java
	edu/stanford/nlp/util/SystemUtils.java
	edu/stanford/nlp/util/Timing.java
	edu/stanford/nlp/util/Triple.java
	edu/stanford/nlp/util/TypesafeMap.java
	edu/stanford/nlp/util/XMLUtils.java
	edu/stanford/nlp/util/concurrent/SynchronizedInterner.java
	edu/stanford/nlp/util/logging/Color.java
	edu/stanford/nlp/util/logging/LogRecordHandler.java
	edu/stanford/nlp/util/logging/OutputHandler.java
	edu/stanford/nlp/util/logging/PrettyLoggable.java
	edu/stanford/nlp/util/logging/PrettyLogger.java
	edu/stanford/nlp/util/logging/Redwood.java
	edu/stanford/nlp/util/logging/RedwoodConfiguration.java
	edu/stanford/nlp/util/logging/RedwoodPrintStream.java
	edu/stanford/nlp/util/logging/RepeatedRecordHandler.java
	edu/stanford/nlp/util/logging/Style.java
	edu/stanford/nlp/util/logging/VisibilityHandler.java

#####
GENERATING JAR FILE
#####

JAR file:
	/u/nlp/distrib//stanford-ner-2012-05-22/stanford-ner-src-2012-05-22.jar
Root directory:
	/user/horatio/releases/v1.3.2/projects/core/src

jar cf /juicy/u44/u/nlp/distrib/stanford-ner-2012-05-22/stanford-ner-src-2012-05-22.jar edu/stanford/nlp/classify/AbstractLinearClassifierFactory.java \
 edu/stanford/nlp/classify/AdaptedGaussianPriorObjectiveFunction.java \
 edu/stanford/nlp/classify/BiasedLogConditionalObjectiveFunction.java \
 edu/stanford/nlp/classify/Classifier.java \
 edu/stanford/nlp/classify/ClassifierCreator.java \
 edu/stanford/nlp/classify/ClassifierFactory.java \
 edu/stanford/nlp/classify/CrossValidator.java \
 edu/stanford/nlp/classify/Dataset.java \
 edu/stanford/nlp/classify/GeneralDataset.java \
 edu/stanford/nlp/classify/GeneralizedExpectationObjectiveFunction.java \
 edu/stanford/nlp/classify/LinearClassifier.java \
 edu/stanford/nlp/classify/LinearClassifierFactory.java \
 edu/stanford/nlp/classify/LogConditionalObjectiveFunction.java \
 edu/stanford/nlp/classify/LogPrior.java \
 edu/stanford/nlp/classify/NBLinearClassifierFactory.java \
 edu/stanford/nlp/classify/PRCurve.java \
 edu/stanford/nlp/classify/ProbabilisticClassifier.java \
 edu/stanford/nlp/classify/ProbabilisticClassifierCreator.java \
 edu/stanford/nlp/classify/RVFClassifier.java \
 edu/stanford/nlp/classify/RVFDataset.java \
 edu/stanford/nlp/classify/SVMLightClassifier.java \
 edu/stanford/nlp/classify/SVMLightClassifierFactory.java \
 edu/stanford/nlp/classify/SemiSupervisedLogConditionalObjectiveFunction.java \
 edu/stanford/nlp/classify/WeightedDataset.java \
 edu/stanford/nlp/fsm/DFSA.java \
 edu/stanford/nlp/fsm/DFSAState.java \
 edu/stanford/nlp/fsm/DFSATransition.java \
 edu/stanford/nlp/ie/AbstractSequenceClassifier.java \
 edu/stanford/nlp/ie/AcquisitionsPrior.java \
 edu/stanford/nlp/ie/ClassifierCombiner.java \
 edu/stanford/nlp/ie/EmpiricalNERPrior.java \
 edu/stanford/nlp/ie/EntityCachingAbstractSequencePrior.java \
 edu/stanford/nlp/ie/NERFeatureFactory.java \
 edu/stanford/nlp/ie/NERServer.java \
 edu/stanford/nlp/ie/SeminarsPrior.java \
 edu/stanford/nlp/ie/UniformPrior.java \
 edu/stanford/nlp/ie/crf/CRFBiasedClassifier.java \
 edu/stanford/nlp/ie/crf/CRFClassifier.java \
 edu/stanford/nlp/ie/crf/CRFClassifierEvaluator.java \
 edu/stanford/nlp/ie/crf/CRFCliqueTree.java \
 edu/stanford/nlp/ie/crf/CRFDatum.java \
 edu/stanford/nlp/ie/crf/CRFFeatureExporter.java \
 edu/stanford/nlp/ie/crf/CRFLabel.java \
 edu/stanford/nlp/ie/crf/CRFLogConditionalObjectiveFloatFunction.java \
 edu/stanford/nlp/ie/crf/CRFLogConditionalObjectiveFunction.java \
 edu/stanford/nlp/ie/crf/FactorTable.java \
 edu/stanford/nlp/ie/crf/FloatFactorTable.java \
 edu/stanford/nlp/ie/crf/NERGUI.java \
 edu/stanford/nlp/ie/crf/ner-manifest.txt \
 edu/stanford/nlp/ie/crf/package.html \
 edu/stanford/nlp/ie/demo/NERDemo.java \
 edu/stanford/nlp/ie/ner/CMMClassifier.java \
 edu/stanford/nlp/ie/package.html \
 edu/stanford/nlp/ie/pascal/AcronymModel.java \
 edu/stanford/nlp/ie/pascal/Alignment.java \
 edu/stanford/nlp/ie/pascal/AlignmentFactory.java \
 edu/stanford/nlp/ie/pascal/CliqueTemplates.java \
 edu/stanford/nlp/ie/pascal/DateTemplate.java \
 edu/stanford/nlp/ie/pascal/DefaultTeXHyphenData.java \
 edu/stanford/nlp/ie/pascal/InfoTemplate.java \
 edu/stanford/nlp/ie/pascal/PascalTemplate.java \
 edu/stanford/nlp/ie/pascal/Prior.java \
 edu/stanford/nlp/ie/pascal/RelationalModel.java \
 edu/stanford/nlp/ie/pascal/TeXHyphenator.java \
 edu/stanford/nlp/international/morph/MorphoFeatureSpecification.java \
 edu/stanford/nlp/international/morph/MorphoFeatures.java \
 edu/stanford/nlp/io/BZip2PipedOutputStream.java \
 edu/stanford/nlp/io/EncodingFileReader.java \
 edu/stanford/nlp/io/EncodingPrintWriter.java \
 edu/stanford/nlp/io/ExtensionFileFilter.java \
 edu/stanford/nlp/io/IOUtils.java \
 edu/stanford/nlp/io/NumberRangesFileFilter.java \
 edu/stanford/nlp/io/RegExFileFilter.java \
 edu/stanford/nlp/io/RuntimeIOException.java \
 edu/stanford/nlp/ling/AnnotationLookup.java \
 edu/stanford/nlp/ling/BasicDatum.java \
 edu/stanford/nlp/ling/CategoryWordTag.java \
 edu/stanford/nlp/ling/CategoryWordTagFactory.java \
 edu/stanford/nlp/ling/CoreAnnotation.java \
 edu/stanford/nlp/ling/CoreAnnotations.java \
 edu/stanford/nlp/ling/CoreLabel.java \
 edu/stanford/nlp/ling/CyclicCoreLabel.java \
 edu/stanford/nlp/ling/Datum.java \
 edu/stanford/nlp/ling/Document.java \
 edu/stanford/nlp/ling/Featurizable.java \
 edu/stanford/nlp/ling/HasCategory.java \
 edu/stanford/nlp/ling/HasContext.java \
 edu/stanford/nlp/ling/HasIndex.java \
 edu/stanford/nlp/ling/HasOffset.java \
 edu/stanford/nlp/ling/HasTag.java \
 edu/stanford/nlp/ling/HasWord.java \
 edu/stanford/nlp/ling/Label.java \
 edu/stanford/nlp/ling/LabelFactory.java \
 edu/stanford/nlp/ling/Labeled.java \
 edu/stanford/nlp/ling/LabeledWord.java \
 edu/stanford/nlp/ling/RVFDatum.java \
 edu/stanford/nlp/ling/Sentence.java \
 edu/stanford/nlp/ling/StringLabel.java \
 edu/stanford/nlp/ling/StringLabelFactory.java \
 edu/stanford/nlp/ling/TaggedWord.java \
 edu/stanford/nlp/ling/TaggedWordFactory.java \
 edu/stanford/nlp/ling/ValueLabel.java \
 edu/stanford/nlp/ling/Word.java \
 edu/stanford/nlp/ling/WordFactory.java \
 edu/stanford/nlp/ling/WordLemmaTag.java \
 edu/stanford/nlp/ling/WordLemmaTagFactory.java \
 edu/stanford/nlp/ling/WordTag.java \
 edu/stanford/nlp/ling/WordTagFactory.java \
 edu/stanford/nlp/math/ADMath.java \
 edu/stanford/nlp/math/ArrayMath.java \
 edu/stanford/nlp/math/DoubleAD.java \
 edu/stanford/nlp/math/SloppyMath.java \
 edu/stanford/nlp/maxent/Convert.java \
 edu/stanford/nlp/objectbank/DelimitRegExIterator.java \
 edu/stanford/nlp/objectbank/IdentityFunction.java \
 edu/stanford/nlp/objectbank/IteratorFromReaderFactory.java \
 edu/stanford/nlp/objectbank/LineIterator.java \
 edu/stanford/nlp/objectbank/ObjectBank.java \
 edu/stanford/nlp/objectbank/ReaderIteratorFactory.java \
 edu/stanford/nlp/objectbank/ResettableReaderIteratorFactory.java \
 edu/stanford/nlp/objectbank/TokenizerFactory.java \
 edu/stanford/nlp/objectbank/XMLBeginEndIterator.java \
 edu/stanford/nlp/optimization/AbstractCachingDiffFloatFunction.java \
 edu/stanford/nlp/optimization/AbstractCachingDiffFunction.java \
 edu/stanford/nlp/optimization/AbstractStochasticCachingDiffFunction.java \
 edu/stanford/nlp/optimization/AbstractStochasticCachingDiffUpdateFunction.java \
 edu/stanford/nlp/optimization/CGMinimizer.java \
 edu/stanford/nlp/optimization/CmdEvaluator.java \
 edu/stanford/nlp/optimization/DiffFloatFunction.java \
 edu/stanford/nlp/optimization/DiffFunction.java \
 edu/stanford/nlp/optimization/Evaluator.java \
 edu/stanford/nlp/optimization/FloatFunction.java \
 edu/stanford/nlp/optimization/Function.java \
 edu/stanford/nlp/optimization/GoldenSectionLineSearch.java \
 edu/stanford/nlp/optimization/HasEvaluators.java \
 edu/stanford/nlp/optimization/HasFloatInitial.java \
 edu/stanford/nlp/optimization/HasInitial.java \
 edu/stanford/nlp/optimization/HybridMinimizer.java \
 edu/stanford/nlp/optimization/LineSearcher.java \
 edu/stanford/nlp/optimization/MemoryEvaluator.java \
 edu/stanford/nlp/optimization/Minimizer.java \
 edu/stanford/nlp/optimization/QNMinimizer.java \
 edu/stanford/nlp/optimization/ResultStoringFloatMonitor.java \
 edu/stanford/nlp/optimization/ResultStoringMonitor.java \
 edu/stanford/nlp/optimization/SGDMinimizer.java \
 edu/stanford/nlp/optimization/SGDToQNMinimizer.java \
 edu/stanford/nlp/optimization/SMDMinimizer.java \
 edu/stanford/nlp/optimization/SQNMinimizer.java \
 edu/stanford/nlp/optimization/ScaledSGDMinimizer.java \
 edu/stanford/nlp/optimization/StochasticCalculateMethods.java \
 edu/stanford/nlp/optimization/StochasticDiffFunctionTester.java \
 edu/stanford/nlp/optimization/StochasticInPlaceMinimizer.java \
 edu/stanford/nlp/optimization/StochasticMinimizer.java \
 edu/stanford/nlp/parser/KBestViterbiParser.java \
 edu/stanford/nlp/parser/Parser.java \
 edu/stanford/nlp/parser/ViterbiParser.java \
 edu/stanford/nlp/parser/lexparser/AbstractDependencyGrammar.java \
 edu/stanford/nlp/parser/lexparser/AbstractTreeExtractor.java \
 edu/stanford/nlp/parser/lexparser/AbstractTreebankParserParams.java \
 edu/stanford/nlp/parser/lexparser/BaseLexicon.java \
 edu/stanford/nlp/parser/lexparser/BasicCategoryTagProjection.java \
 edu/stanford/nlp/parser/lexparser/DependencyGrammar.java \
 edu/stanford/nlp/parser/lexparser/EnglishTreebankParserParams.java \
 edu/stanford/nlp/parser/lexparser/Extractor.java \
 edu/stanford/nlp/parser/lexparser/IntDependency.java \
 edu/stanford/nlp/parser/lexparser/IntTaggedWord.java \
 edu/stanford/nlp/parser/lexparser/Lexicon.java \
 edu/stanford/nlp/parser/lexparser/MLEDependencyGrammar.java \
 edu/stanford/nlp/parser/lexparser/MLEDependencyGrammarExtractor.java \
 edu/stanford/nlp/parser/lexparser/Options.java \
 edu/stanford/nlp/parser/lexparser/TagProjection.java \
 edu/stanford/nlp/parser/lexparser/TestOptions.java \
 edu/stanford/nlp/parser/lexparser/TestTagProjection.java \
 edu/stanford/nlp/parser/lexparser/TrainOptions.java \
 edu/stanford/nlp/parser/lexparser/TreeCollinizer.java \
 edu/stanford/nlp/parser/lexparser/TreebankLangParserParams.java \
 edu/stanford/nlp/parser/lexparser/UnknownWordModel.java \
 edu/stanford/nlp/parser/lexparser/UnknownWordModelTrainer.java \
 edu/stanford/nlp/parser/metrics/AbstractEval.java \
 edu/stanford/nlp/parser/tools/PunctEquivalenceClasser.java \
 edu/stanford/nlp/pipeline/Annotation.java \
 edu/stanford/nlp/pipeline/ChunkAnnotationUtils.java \
 edu/stanford/nlp/pipeline/CoreMapAttributeAggregator.java \
 edu/stanford/nlp/pipeline/LabeledChunkIdentifier.java \
 edu/stanford/nlp/process/AbstractTokenizer.java \
 edu/stanford/nlp/process/Americanize.java \
 edu/stanford/nlp/process/CoreLabelTokenFactory.java \
 edu/stanford/nlp/process/CoreTokenFactory.java \
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rm -f $dir/depdump
cp $classjar $dir/stanford-ner.jar






mkdir $dir/src
cd $dir/src
unzip $srcjar
Archive:  /u/nlp/distrib//stanford-ner-2012-05-22/stanford-ner-src-2012-05-22.jar
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  inflating: edu/stanford/nlp/util/logging/RepeatedRecordHandler.java  
  inflating: edu/stanford/nlp/util/logging/Style.java  
  inflating: edu/stanford/nlp/util/logging/VisibilityHandler.java  
rm -rf META-INF
rm -f $srcjar


sed -e '1,2d' edu/stanford/nlp/ie/demo/NERDemo.java > ../NERDemo.java




cd $dir
mkdir javadoc
javadoc -d javadoc -sourcepath src -J-mx256m -subpackages edu.stanford.nlp -author -bottom '<FONT SIZE=2><A HREF="http://nlp.stanford.edu">Stanford NLP Group</A></FONT>' -doctitle "Stanford JavaNLP NER Classifier API Documentation" -link "http://java.sun.com/j2se/1.6.0/docs/api" -windowtitle "Stanford JavaNLP API"
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Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.AdvClauseModifierGRAnnotation.html...
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Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.AgentGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.AppositionalModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ArgumentGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.AttributiveGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.AuxModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.AuxPassiveGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ClausalComplementGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ClausalPassiveSubjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ClausalSubjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ComplementGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ComplementizerGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ConjunctGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ControllingSubjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.CoordinationGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.CopulaGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.DeterminerGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.DirectObjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ExpletiveGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.IndirectObjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.InfinitivalModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.MarkerGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.MultiWordExpressionGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.NegationModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.NominalPassiveSubjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.NominalSubjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.NounCompoundModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.NpAdverbialModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.NumberModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.NumericModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ObjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ParataxisGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ParticipialModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PhrasalVerbParticleGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PossessionModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PossessiveModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PreconjunctGRAnnotation.html...
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Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PredicateGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PrepositionalComplementGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PrepositionalModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PrepositionalObjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PunctuationGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.PurposeClauseModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.QuantifierModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.ReferentGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.RelativeClauseModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.RelativeGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.SemanticDependentGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.SubjectGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.TemporalModifierGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalRelations.XClausalComplementGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalStructure.html...
Generating javadoc/edu/stanford/nlp/trees//EnglishGrammaticalStructure.FromDependenciesFactory.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.DependentGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.GovernorGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.GrammaticalRelationAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.KillGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.Language.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalRelation.RootGRAnnotation.html...
Generating javadoc/edu/stanford/nlp/trees//GrammaticalStructure.html...
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Generating javadoc/edu/stanford/nlp/trees//HeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees//Labeled.html...
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Generating javadoc/edu/stanford/nlp/trees//NPTmpRetainingTreeNormalizer.html...
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Generating javadoc/edu/stanford/nlp/trees//PennTreebankLanguagePack.html...
Generating javadoc/edu/stanford/nlp/trees//PennTreebankTokenizer.html...
Generating javadoc/edu/stanford/nlp/trees//PennTreeReader.html...
Generating javadoc/edu/stanford/nlp/trees//PennTreeReaderFactory.html...
Generating javadoc/edu/stanford/nlp/trees//QPTreeTransformer.html...
Generating javadoc/edu/stanford/nlp/trees//SemanticHeadFinder.html...
Generating javadoc/edu/stanford/nlp/trees//SimpleConstituent.html...
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Generating javadoc/edu/stanford/nlp/trees//SimpleTree.html...
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Generating javadoc/edu/stanford/nlp/trees//TransformingTreebank.html...
Generating javadoc/edu/stanford/nlp/trees//Tree.html...
Generating javadoc/edu/stanford/nlp/trees//Treebank.html...
Generating javadoc/edu/stanford/nlp/trees//TreebankFactory.html...
Generating javadoc/edu/stanford/nlp/trees//TreebankLanguagePack.html...
Generating javadoc/edu/stanford/nlp/trees//TreeCoreAnnotations.html...
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Generating javadoc/edu/stanford/nlp/trees//TreeGraph.html...
Generating javadoc/edu/stanford/nlp/trees//TreeGraphNode.html...
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Generating javadoc/edu/stanford/nlp/trees//TreePrint.html...
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Generating javadoc/edu/stanford/nlp/trees//Trees.html...
Generating javadoc/edu/stanford/nlp/trees//TreeTokenizerFactory.html...
Generating javadoc/edu/stanford/nlp/trees//TreeTransformer.html...
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Generating javadoc/edu/stanford/nlp/trees//TypedDependency.html...
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Generating javadoc/edu/stanford/nlp/trees//WordNetConnection.html...
Generating javadoc/edu/stanford/nlp/trees//WordStemmer.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//ChineseEnglishWordMap.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//ChineseHeadFinder.html...
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Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//CHTBTokenizer.html...
Generating javadoc/edu/stanford/nlp/trees/international/pennchinese//CTBTreeReaderFactory.html...
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Generating javadoc/edu/stanford/nlp/trees/tregex/tsurgeon//TsurgeonParserTreeConstants.html...
Generating javadoc/edu/stanford/nlp/trees/tregex/tsurgeon//TsurgeonPattern.html...
Generating javadoc/edu/stanford/nlp/international/morph//MorphoFeatures.html...
Generating javadoc/edu/stanford/nlp/international/morph//MorphoFeatureSpecification.html...
/juicy/u44/u/nlp/distrib/stanford-ner-2012-05-22/src/edu/stanford/nlp/international/morph/MorphoFeatureSpecification.java:57: warning - @return tag has no arguments.
Generating javadoc/edu/stanford/nlp/international/morph//MorphoFeatureSpecification.MorphoFeatureType.html...
Generating javadoc/edu/stanford/nlp/io//BZip2PipedOutputStream.html...
Generating javadoc/edu/stanford/nlp/io//EncodingFileReader.html...
Generating javadoc/edu/stanford/nlp/io//EncodingPrintWriter.html...
Generating javadoc/edu/stanford/nlp/io//EncodingPrintWriter.err.html...
Generating javadoc/edu/stanford/nlp/io//EncodingPrintWriter.out.html...
Generating javadoc/edu/stanford/nlp/io//ExtensionFileFilter.html...
Generating javadoc/edu/stanford/nlp/io//IOUtils.html...
Generating javadoc/edu/stanford/nlp/io//NumberRangesFileFilter.html...
Generating javadoc/edu/stanford/nlp/io//RegExFileFilter.html...
Generating javadoc/edu/stanford/nlp/io//RuntimeIOException.html...
Generating javadoc/edu/stanford/nlp/ie/ner//CMMClassifier.html...
Generating javadoc/edu/stanford/nlp/ie//AbstractSequenceClassifier.html...
Generating javadoc/edu/stanford/nlp/ie//AcquisitionsPrior.html...
Generating javadoc/edu/stanford/nlp/ie//ClassifierCombiner.html...
Generating javadoc/edu/stanford/nlp/ie//EmpiricalNERPrior.html...
Generating javadoc/edu/stanford/nlp/ie//EntityCachingAbstractSequencePrior.html...
Generating javadoc/edu/stanford/nlp/ie//NERFeatureFactory.html...
Generating javadoc/edu/stanford/nlp/ie//NERServer.html...
Generating javadoc/edu/stanford/nlp/ie//NERServer.NERClient.html...
Generating javadoc/edu/stanford/nlp/ie//SeminarsPrior.html...
Generating javadoc/edu/stanford/nlp/ie//UniformPrior.html...
Generating javadoc/edu/stanford/nlp/ie/pascal//AcronymModel.html...
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Generating javadoc/edu/stanford/nlp/ie/pascal//AcronymModel.SyllableBoundary.html...
Generating javadoc/edu/stanford/nlp/ie/pascal//AcronymModel.WordsSkipped.html...
Generating javadoc/edu/stanford/nlp/ie/pascal//Alignment.html...
Generating javadoc/edu/stanford/nlp/ie/pascal//AlignmentFactory.html...
Generating javadoc/edu/stanford/nlp/ie/pascal//CliqueTemplates.html...
Generating javadoc/edu/stanford/nlp/ie/pascal//DateTemplate.html...
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Generating javadoc/edu/stanford/nlp/ie/pascal//InfoTemplate.html...
Generating javadoc/edu/stanford/nlp/ie/pascal//PascalTemplate.html...
Generating javadoc/edu/stanford/nlp/ie/pascal//Prior.html...
Generating javadoc/edu/stanford/nlp/ie/pascal//RelationalModel.html...
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Generating javadoc/edu/stanford/nlp/ie/demo//NERDemo.html...
Generating javadoc/edu/stanford/nlp/ie/crf//CRFBiasedClassifier.html...
Generating javadoc/edu/stanford/nlp/ie/crf//CRFClassifier.html...
/juicy/u44/u/nlp/distrib/stanford-ner-2012-05-22/src/edu/stanford/nlp/ie/crf/CRFClassifier.java:133: warning - Tag @link: reference not found: edu.stanford.nlp.wordseg.SighanFeatureFactory
/juicy/u44/u/nlp/distrib/stanford-ner-2012-05-22/src/edu/stanford/nlp/ie/crf/CRFClassifier.java:133: warning - Tag @link: reference not found: edu.stanford.nlp.wordseg.ChineseSegmenterFeatureFactory
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Generating javadoc/edu/stanford/nlp/ie/crf//CRFClassifierEvaluator.html...
Generating javadoc/edu/stanford/nlp/ie/crf//CRFCliqueTree.html...
Generating javadoc/edu/stanford/nlp/ie/crf//CRFDatum.html...
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Generating javadoc/edu/stanford/nlp/ie/crf//CRFLabel.html...
Generating javadoc/edu/stanford/nlp/ie/crf//CRFLogConditionalObjectiveFloatFunction.html...
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Generating javadoc/edu/stanford/nlp/ie/crf//FactorTable.html...
Generating javadoc/edu/stanford/nlp/ie/crf//FloatFactorTable.html...
Generating javadoc/edu/stanford/nlp/ie/crf//NERGUI.html...
Generating javadoc/edu/stanford/nlp/math//ADMath.html...
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Generating javadoc/edu/stanford/nlp/math//DoubleAD.html...
Generating javadoc/edu/stanford/nlp/math//SloppyMath.html...
Generating javadoc/edu/stanford/nlp/classify//AbstractLinearClassifierFactory.html...
Generating javadoc/edu/stanford/nlp/classify//AdaptedGaussianPriorObjectiveFunction.html...
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Generating javadoc/edu/stanford/nlp/classify//Classifier.html...
Generating javadoc/edu/stanford/nlp/classify//ClassifierCreator.html...
Generating javadoc/edu/stanford/nlp/classify//ClassifierFactory.html...
Generating javadoc/edu/stanford/nlp/classify//CrossValidator.html...
Generating javadoc/edu/stanford/nlp/classify//CrossValidator.SavedState.html...
Generating javadoc/edu/stanford/nlp/classify//Dataset.html...
Generating javadoc/edu/stanford/nlp/classify//GeneralDataset.html...
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Generating javadoc/edu/stanford/nlp/classify//LinearClassifier.html...
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Generating javadoc/edu/stanford/nlp/classify//RVFClassifier.html...
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Generating javadoc/edu/stanford/nlp/classify//SVMLightClassifier.html...
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Generating javadoc/edu/stanford/nlp/ling//AnnotationLookup.KeyLookup.html...
Generating javadoc/edu/stanford/nlp/ling//BasicDatum.html...
Generating javadoc/edu/stanford/nlp/ling//CategoryWordTag.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.html...
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Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CalendarAnnotation.html...
Generating javadoc/edu/stanford/nlp/ling//CoreAnnotations.CategoryAnnotation.html...
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857 warnings







cd $nerplace

cp -f README.txt $dir || exit
cp -f LICENSE.txt $dir || exit

cp -f ner.bat ner.sh ner-gui.bat ner-gui.sh ner-gui.command $dir || exit
cp -f sample.txt $dir || exit
cp -f build.xml $dir || exit




cd $dir
ant -noclasspath || exit
Buildfile: /juicy/u44/u/nlp/distrib/stanford-ner-2012-05-22/build.xml

prepare:
    [mkdir] Created dir: /juicy/u44/u/nlp/distrib/stanford-ner-2012-05-22/classes

classpath:

compile:
    [javac] /juicy/u44/u/nlp/distrib/stanford-ner-2012-05-22/build.xml:121: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
    [javac] Compiling 439 source files to /juicy/u44/u/nlp/distrib/stanford-ner-2012-05-22/classes
    [javac] Note: Some input files use or override a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.

BUILD SUCCESSFUL
Total time: 14 seconds
rm -rf classes




zip -r $srczip src
  adding: src/ (stored 0%)
  adding: src/edu/ (stored 0%)
  adding: src/edu/stanford/ (stored 0%)
  adding: src/edu/stanford/nlp/ (stored 0%)
  adding: src/edu/stanford/nlp/fsm/ (stored 0%)
  adding: src/edu/stanford/nlp/fsm/DFSA.java (deflated 72%)
  adding: src/edu/stanford/nlp/fsm/DFSAState.java (deflated 69%)
  adding: src/edu/stanford/nlp/fsm/DFSATransition.java (deflated 62%)
  adding: src/edu/stanford/nlp/objectbank/ (stored 0%)
  adding: src/edu/stanford/nlp/objectbank/IteratorFromReaderFactory.java (deflated 46%)
  adding: src/edu/stanford/nlp/objectbank/ResettableReaderIteratorFactory.java (deflated 66%)
  adding: src/edu/stanford/nlp/objectbank/LineIterator.java (deflated 65%)
  adding: src/edu/stanford/nlp/objectbank/TokenizerFactory.java (deflated 50%)
  adding: src/edu/stanford/nlp/objectbank/XMLBeginEndIterator.java (deflated 74%)
  adding: src/edu/stanford/nlp/objectbank/IdentityFunction.java (deflated 37%)
  adding: src/edu/stanford/nlp/objectbank/ReaderIteratorFactory.java (deflated 73%)
  adding: src/edu/stanford/nlp/objectbank/ObjectBank.java (deflated 73%)
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  adding: javadoc/edu/stanford/nlp/optimization/AbstractStochasticCachingDiffFunction.html (deflated 87%)
  adding: javadoc/edu/stanford/nlp/optimization/package-frame.html (deflated 84%)
  adding: javadoc/edu/stanford/nlp/optimization/QNMinimizer.eState.html (deflated 85%)
  adding: javadoc/edu/stanford/nlp/optimization/SGDMinimizer.html (deflated 88%)
  adding: javadoc/edu/stanford/nlp/optimization/AbstractCachingDiffFunction.html (deflated 86%)
  adding: javadoc/edu/stanford/nlp/optimization/ResultStoringMonitor.html (deflated 83%)
  adding: javadoc/edu/stanford/nlp/optimization/ResultStoringFloatMonitor.html (deflated 83%)
  adding: javadoc/edu/stanford/nlp/optimization/StochasticMinimizer.InvalidElementException.html (deflated 84%)
  adding: javadoc/allclasses-frame.html (deflated 92%)
rm -rf src
rm -rf javadoc




mkdir $dir/classifiers
rm -rf $dir/classifiers/*
rm: No match.
cd $dir

cp -f $classifierhome/*class.distsim.prop $classifierhome/*class.distsim.crf.ser.gz $dir/classifiers || exit


./ner.sh sample.txt > sample.ner.txt || exit
CRFClassifier invoked on Fri Jun 01 10:08:41 PDT 2012 with arguments:
   -loadClassifier ./classifiers/english.all.3class.distsim.crf.ser.gz -textFile sample.txt
loadClassifier=./classifiers/english.all.3class.distsim.crf.ser.gz
textFile=sample.txt
Loading classifier from ./classifiers/english.all.3class.distsim.crf.ser.gz ... done [6.5 sec].
CRFClassifier tagged 84 words in 2 documents at 552.63 words per second.

cd $base

rm -rf $predir.tgz
tar -czf $predir.tgz $predir
